Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00881
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       31   1.2  
SB_22391| Best HMM Match : C1_1 (HMM E-Value=3.6e-17)                  28   8.2  

>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 261  DANRVQRAASKTPQSRACGDYYHNYILLHRRDLVNDRYGLNTSSCDCLSIVLTTSLKF 88
            D N++    S+  Q R+CGD YH  IL  + +         T SC+  S +  TS KF
Sbjct: 5186 DGNKI--LTSRNVQIRSCGDVYHLIILFTKSE------HAGTYSCEATSKLGNTSAKF 5235


>SB_22391| Best HMM Match : C1_1 (HMM E-Value=3.6e-17)
          Length = 103

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 450 HYCKRI*QYDITTGLKLMSCNPSTHHEC 533
           +YC ++ +  I  G+K  +C    HH+C
Sbjct: 62  YYCNKLLKGFIKQGVKCKNCKMGVHHKC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,739,036
Number of Sequences: 59808
Number of extensions: 386350
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)