Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00881
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   5.1  
At3g51130.1 68416.m05599 expressed protein contains Pfam PF03676...    27   8.9  
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    27   8.9  

>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 162  LNLFGVIKCNYDNNHHTLEIEAFLRRLF 245
            L+ F  + C+Y NN HT  +  + RRLF
Sbjct: 3002 LDGFQDVLCSYINNPHTAFVRRYARRLF 3029


>At3g51130.1 68416.m05599 expressed protein contains Pfam PF03676:
           Uncharacterised protein family (UPF0183)
          Length = 410

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 249 VQRAASKTPQSRACGDYYHNY 187
           +  A+   P++  CGDY++NY
Sbjct: 273 IHSASDPRPKTTICGDYFYNY 293


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 405 NCCLFIGYVFMFLDFHYCKR 464
           NC + +G +F +  F YCK+
Sbjct: 650 NCWIIVGVIFNYFVFKYCKK 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,465
Number of Sequences: 28952
Number of extensions: 261579
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)