Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00880
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 457 AGTRRGLSLRDGAEGPLH 510
           A   RG +  DGA GPLH
Sbjct: 287 AAAARGAARADGAGGPLH 304



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 527 PTRPSATSRGATPHSSNTPSCSDPPARSRVP 619
           PT P+    G  P +    S   PPA S +P
Sbjct: 51  PTNPAFFHPGLLPLAWQANSPPSPPAPSELP 81


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 159 YQVKPIRNLNGHSIE 203
           +  KPI+ LNGH I+
Sbjct: 133 FYYKPIKTLNGHEIK 147


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 560 TPHSSNTPSCSDPPARSRVP 619
           TPH SNT S    P+ S  P
Sbjct: 255 TPHGSNTSSLITTPSPSASP 274


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 518 WWTPTRPSATSRGATPHSSNTPSCSDPPARS 610
           +W+P   +A +     +S+  P  SDP   S
Sbjct: 107 FWSPAATAAATATEYKYSAAAPGPSDPSVSS 137


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 539 SATSRGATPHSSNTPSCSDP 598
           SAT+     +SS++PS S P
Sbjct: 26  SATTEAPAAYSSSSPSGSSP 45


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 539 SATSRGATPHSSNTPSCSDP 598
           SAT+     +SS++PS S P
Sbjct: 26  SATTEAPAAYSSSSPSGSSP 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,772
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)