Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00880
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   117   2e-27
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.98 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    27   2.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   9.1  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  117 bits (281), Expect = 2e-27
 Identities = 55/100 (55%), Positives = 70/100 (70%)
 Frame = +2

Query: 260 RMEENEIYAIETFGSTGRGQVHDDMDCSHYMKNFDQQFVPLRLQSSKQLLNVINKNFGTL 439
           +MEE EI+AIETFGSTGRG VH+DM+CSHY K  D   +PLRL  +K LLN I +NFGTL
Sbjct: 302 KMEEGEIFAIETFGSTGRGVVHEDMECSHYAKIPDAGHIPLRLPRAKALLNTITQNFGTL 361

Query: 440 AFCKRWLERAGASRYAMALKDLCTRGWWTPTRPSATSRGA 559
            FC+R+L+R G S+Y +AL +L + G      P    RG+
Sbjct: 362 PFCRRYLDRIGESKYLLALNNLVSAGIVQDYPPLCDIRGS 401



 Score =  113 bits (272), Expect = 3e-26
 Identities = 49/84 (58%), Positives = 69/84 (82%)
 Frame = +3

Query: 6   FNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNL 185
           F+P+YD L+  V+ AT  GI+ +G+D RL ++G A+QEVMES+EVE++G+ +QVK IRNL
Sbjct: 217 FDPQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNL 276

Query: 186 NGHSIEPYKIHAGKTVPIVKGGEQ 257
            GH+++PY IH GK+VPIVKGGE+
Sbjct: 277 CGHNLDPYIIHGGKSVPIVKGGEE 300



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 514 GVVDAYPPLCDIKGCYTAQFEHTILLRPTCKK 609
           G+V  YPPLCDI+G YTAQFEHTI+L PT K+
Sbjct: 387 GIVQDYPPLCDIRGSYTAQFEHTIILHPTQKE 418



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 582 HPAQTHLQEVVSRGDDY 632
           HP Q   +EVVSRGDDY
Sbjct: 413 HPTQ---KEVVSRGDDY 426


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 609 LLAGGSEQDGVFELCGVAPLDVAEGRV 529
           LL  GSE+DG  +  G+ PL + +G++
Sbjct: 118 LLPEGSEEDGHLKETGITPLSLQQGKI 144


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +2

Query: 506 CTRGWWTPTRPSATSRGATPHSSNTPSCSDPPARSR--VPWR*LLTSDPTNLLNATSYSS 679
           CT     P   +  +      SS+TP  S P   +        L TS P    N+TS SS
Sbjct: 555 CTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSS 614

Query: 680 TRVNPNS 700
           T+V+ NS
Sbjct: 615 TQVSWNS 621


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 696 LGFTRVDEYEVAFKRLVGSEVSSHRHGTRLLAGGSEQDGVFELCG 562
           +GFT   EY +    L+     S +  T LL GG E   + EL G
Sbjct: 106 MGFTTATEYHIRRSELITITTGSKQLDT-LLQGGVETGSITELFG 149


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 708 SCPELGFTRVDEYEVAFKRL---VGSEVSSHRHGTRLLAGGSEQDG 580
           +C   GF   +++++  + +   + S +SS R GTR L+ G + DG
Sbjct: 217 TCAIRGFASTEQFKLGIQTIRLSLISRLSSLRAGTRFLSRGVDDDG 262


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 521 WTPTRPSATSRGATPHSSNTPSCSDPPARSRVPWR*LLTSDPTNLLNATSY 673
           W P  P+  + G +  S N  S  +PP  S+  +       P   L+A+SY
Sbjct: 300 WHPLYPNLLTTGGSDGSVNHYSLDEPPLLSQQKYH---EKHPNVTLSASSY 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,918
Number of Sequences: 5004
Number of extensions: 62757
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)