Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00880
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 134 6e-32
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 134 1e-31
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 40 0.002
02_01_0302 - 2021221-2023305 32 0.44
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 30 2.3
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 30 2.3
04_03_0881 + 20528257-20528760,20528837-20529283 29 3.1
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296... 29 4.1
05_01_0242 + 1804183-1806096 29 4.1
01_06_0149 - 27011183-27011836 29 4.1
10_08_0445 + 17989438-17990895 29 5.4
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 5.4
07_03_0826 - 21774445-21774852,21776047-21776083,21776750-217768... 28 7.2
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 28 7.2
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 28 9.5
07_01_0378 + 2826421-2826427,2827286-2827375,2827400-2827639,282... 28 9.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 28 9.5
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 28 9.5
03_05_0141 - 21210176-21212140 28 9.5
02_01_0054 - 404464-405152,406087-406618 28 9.5
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 134 bits (325), Expect = 6e-32
Identities = 66/122 (54%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Frame = +2
Query: 257 TRMEENEIYAIETFGSTGRGQVHDDMDCSHYMKNFDQQFVPLRLQSSKQLLNVINKNFGT 436
T+MEE E YAIETFGSTG+G V +D++CSHYMKNFD VPLR +KQLL IN NFGT
Sbjct: 371 TKMEEGEFYAIETFGSTGKGYVREDLECSHYMKNFDVGHVPLRAAKAKQLLVTINNNFGT 430
Query: 437 LAFCKRWLERAGASRYAMALKDLCTRGWWTPTRPSATSRGA-TPHSSNT----PSCSDPP 601
LAFC+R+L+R G ++Y MALK+LC G P P RG+ S +T P+C +
Sbjct: 431 LAFCRRYLDRLGETKYLMALKNLCDAGIVEPCPPMCDVRGSYVSQSEHTILLRPTCKEVI 490
Query: 602 AR 607
+R
Sbjct: 491 SR 492
Score = 133 bits (321), Expect = 2e-31
Identities = 55/84 (65%), Positives = 74/84 (88%)
Frame = +3
Query: 6 FNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNL 185
FNP +DPL++ ++AT AG+K +G+D RLCDVGAA+QEVMES+EVE++G+++QVK +RNL
Sbjct: 287 FNPMFDPLLQASRDATNAGVKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQVKSVRNL 346
Query: 186 NGHSIEPYKIHAGKTVPIVKGGEQ 257
NGH I PY+IH GK+VP+VKGGEQ
Sbjct: 347 NGHGIGPYQIHFGKSVPVVKGGEQ 370
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +1
Query: 439 RVLQALAGTRRGLSLRDGAEGPLHKGVVDAYPPLCDIKGCYTAQFEHTILLRPTCKKSCP 618
R L L T+ ++L++ + G+V+ PP+CD++G Y +Q EHTILLRPTCK+
Sbjct: 436 RYLDRLGETKYLMALKNLCDA----GIVEPCPPMCDVRGSYVSQSEHTILLRPTCKEVIS 491
Query: 619 VAMTTN 636
+ +N
Sbjct: 492 RGLPSN 497
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 134 bits (323), Expect = 1e-31
Identities = 61/101 (60%), Positives = 75/101 (74%)
Frame = +2
Query: 257 TRMEENEIYAIETFGSTGRGQVHDDMDCSHYMKNFDQQFVPLRLQSSKQLLNVINKNFGT 436
T+MEE E YAIETFGSTG+G V +D++CSHYMKNFD VPLR+ +KQLL IN NFGT
Sbjct: 427 TKMEEGEFYAIETFGSTGKGFVREDLECSHYMKNFDVGHVPLRVAKAKQLLGTINNNFGT 486
Query: 437 LAFCKRWLERAGASRYAMALKDLCTRGWWTPTRPSATSRGA 559
LAFC+R+L+R G ++Y MALK+LC G P P RG+
Sbjct: 487 LAFCRRYLDRLGETKYLMALKNLCDVGIVQPYPPLCDVRGS 527
Score = 132 bits (319), Expect = 3e-31
Identities = 55/84 (65%), Positives = 74/84 (88%)
Frame = +3
Query: 6 FNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNL 185
FNP +D L++ ++AT G+K +G+D RLCDVGAA+QEVMES+EVE++G+++Q+K +RNL
Sbjct: 343 FNPMFDSLLQASKDATNTGVKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQIKSVRNL 402
Query: 186 NGHSIEPYKIHAGKTVPIVKGGEQ 257
NGHSI PY+IHAGK+VPIVKGGEQ
Sbjct: 403 NGHSIGPYQIHAGKSVPIVKGGEQ 426
Score = 61.7 bits (143), Expect = 6e-10
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +1
Query: 514 GVVDAYPPLCDIKGCYTAQFEHTILLRPTCKK 609
G+V YPPLCD++G Y +QFEHTILLRPTCK+
Sbjct: 513 GIVQPYPPLCDVRGSYVSQFEHTILLRPTCKE 544
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 266 EENEIYAIETFGSTGRG--QVHDDMDCSHYMKNFDQQFVPLRLQSSKQLLNVINKNFGTL 439
EENE+YAI+ STG G ++ D+ + Y + D+ + L++++S+ + + I++ F +
Sbjct: 167 EENEVYAIDIVTSTGEGKPKLLDEKQTTIYKRAVDKNY-HLKMKASRFIFSEISQKFPIM 225
Query: 440 AFCKRWLERAGA 475
F R LE A
Sbjct: 226 PFTARALEEKRA 237
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 524 TPTRPSATSRGATPHSSNTPSCSDPPARSRVP 619
TP+ PS +S P SNTPS PP+ + P
Sbjct: 423 TPSYPSPSSSYPAPPGSNTPSYPSPPSSATTP 454
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 507 AQGGGGRLPAPLRHQG--VLHRTVRTHHPAQTHLQEVVSRGDDY*PPI 644
A GGGR R+ V+ TVR P Q H+ +V+ D PPI
Sbjct: 343 ASAGGGRRGYTPRYLAAEVVRSTVRAARPGQRHVVSLVAAPDSALPPI 390
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 455 SACKTRVYQSSC*SR-SEAVSTIAISTEQIADRSFSCSESSPCRRELDHVQ 306
SAC ++ ++ S S+ S+I ++T I S S CR+E+D ++
Sbjct: 674 SACFSKFLEADAFSEYSDTASSITVTTTDIPPSDSSSSSRMDCRQEIDFIR 724
>04_03_0881 + 20528257-20528760,20528837-20529283
Length = 316
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 494 LKDLCTRGWWTPTRPSATSRGATPHSSNTPSCSDPPARSRVPW 622
L+D+ R TPT PS++S +PH PPA S PW
Sbjct: 13 LRDVHHRAPPTPTSPSSSS---SPHCHGRHQLCYPPAPSSWPW 52
>09_02_0012 +
2965797-2966714,2966756-2967011,2967051-2967147,
2967175-2967634,2967804-2968117,2968220-2968235
Length = 686
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 63 IKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNLNGHSIEPYKIHAGKTVPI 239
I+A +D LCD+GA+V V + +L+ + KP+R S Y + VP+
Sbjct: 507 IRAQQLDQALCDLGASVSVVPKDVFDKLNFTVLAPKPMRLQLADSSVCYPARIAEDVPV 565
>05_01_0242 + 1804183-1806096
Length = 637
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -2
Query: 500 PSAPSRNERPRRVPASACKTRVYQSSC*SRSEA--VSTIAISTEQIADRSFSCSESS 336
P+ PSR ERPR P S R ++++ + A V + + +++ R +C+E +
Sbjct: 32 PADPSRTERPRPDPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDA 88
>01_06_0149 - 27011183-27011836
Length = 217
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 657 KRLVGSEVSSHRHGT-RLLAGGSEQDGVFELCGVAPLDVAE 538
+R G S RHG R GG + DG E GVA +D A+
Sbjct: 17 RRRGGGGGMSRRHGRFRFATGGGDGDGDEECAGVAVVDQAD 57
>10_08_0445 + 17989438-17990895
Length = 485
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 533 RPSATSRGATPHSSNTPSCSDPPARSRVPWR 625
R SAT+ TP S P PPA +R PWR
Sbjct: 404 RKSATATNMTPPPS-PPHVRAPPAPARRPWR 433
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 524 TPTRPSATSRGATPHSSNTPS-CSDPPARS 610
TP PS+ S TP +TP+ C PPA S
Sbjct: 286 TPPSPSSGSSRTTPGGCSTPTPCGTPPAPS 315
>07_03_0826 -
21774445-21774852,21776047-21776083,21776750-21776839,
21777251-21777399
Length = 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 489 WR*RTSAQGGGGRLPAPLRHQGVLHRTVRTHHPAQTHLQEVVSRGD 626
WR +A+ G P P R+Q ++ R +HP Q+++ R D
Sbjct: 39 WRGAWTAEDPAGYHPIPARYQDLI---PRRYHPIPARYQDLIPRRD 81
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 524 TPTRPSATSRGATPHSSNTPSCSDPPARS 610
TPT + T ++P SS TPS S P+ S
Sbjct: 223 TPTGSTPTQTPSSPSSSGTPSPSSSPSNS 251
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 30 VKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNLNGHSIEPY 209
+ G E + +KA LCD+GA+V + + +L+ M +P+R S Y
Sbjct: 253 IPGQSEPSVENVKAITTRGALCDLGASVSVMPKDVFDKLNFTMLAPRPMRLQLADSSVRY 312
Query: 210 KIHAGKTVPI 239
+ VP+
Sbjct: 313 HARIAEDVPV 322
>07_01_0378 +
2826421-2826427,2827286-2827375,2827400-2827639,
2827722-2828035,2828604-2828696,2828789-2828977
Length = 310
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 479 RYAMALKDLCTRGWWTPTRPSATSRGATP 565
RYA+ L +LC +W P S+G+ P
Sbjct: 8 RYALRLFNLCLVAFWLPLMVGMNSQGSPP 36
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 89 ALRCRCCCTRGN 124
A RC+CCCTR N
Sbjct: 42 AKRCKCCCTRPN 53
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -2
Query: 539 RGG*ASTTPLCRGPSAPSRNERPRRVPASACKTRVYQSSC*SRSEAVSTIAISTEQIADR 360
RG +T + PS+ +R RPR+ P Y+ S S A + + S + +
Sbjct: 76 RGKRPTTQSISSAPSSAARGGRPRKAP--------YKQPRPSSSGAATGVTASADNLCAE 127
Query: 359 SFSCSE--SSPCRRELDHVQWN 300
F SE + +E D +W+
Sbjct: 128 GFVDSETCNGSGMKEFDKAEWS 149
>03_05_0141 - 21210176-21212140
Length = 654
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 524 TPTRPSATSRG--ATPHSSNTPSCSDPPARSR 613
TPT P A+ A P S +PS S PP+R R
Sbjct: 10 TPTPPCASRDPLHAAPRRSRSPSTSRPPSRHR 41
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 3 HFNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQ 116
H + P+V G A+ + G+ RLCD+G+A +
Sbjct: 223 HLHDGAPPVVHGDVSASNVLLDGRGLGARLCDLGSACE 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,855,107
Number of Sequences: 37544
Number of extensions: 477988
Number of successful extensions: 1734
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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