Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00880
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 546 HQGVLHRTVRTHHPAQTHLQEVVSR 620
           H G LHR +R H   + H   V S+
Sbjct: 159 HSGKLHRHMRIHTGERPHKCTVCSK 183


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 536 PSATSRGATPHSSNTPSCSDPP 601
           P A  RG+ P+ S  P    PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 9   NPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEV 122
           NP+   L    ++  +  I   G D+  C  G   QEV
Sbjct: 90  NPKLGILGTHGRQCNDTSIGVDGCDLMCCGRGYKTQEV 127


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 693  GFTRVDEYEVAFKRLVGSEVSSHRHGTRLLAGGSEQD 583
            GF  V EYE A   + G  ++  R    +  GG+++D
Sbjct: 1541 GFA-VAEYEFATLTVTGGTIAPARELPDVNGGGNDED 1576


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 9   NPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEV 122
           NP+   L    ++  +  I   G D+  C  G   QEV
Sbjct: 91  NPKLGILGTHGRQCNDTSIGVDGCDLMCCGRGYKTQEV 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 524 TPTRPSATSRGATPHSSNTPSCSDPP 601
           T T  + T+   TP+++   S + PP
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPP 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,039
Number of Sequences: 438
Number of extensions: 4542
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)