Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DNV4 Cluster: 3'5'-cyclic nucleotide phosphodiesteras...    33   7.3  
UniRef50_P32857 Cluster: Protein PTM1 precursor; n=5; Saccharomy...    33   7.3  
UniRef50_A2AX39 Cluster: Peptidyl-prolyl cis-trans isomerase; n=...    33   9.6  

>UniRef50_A2DNV4 Cluster: 3'5'-cyclic nucleotide phosphodiesterase
           family protein; n=1; Trichomonas vaginalis G3|Rep:
           3'5'-cyclic nucleotide phosphodiesterase family protein
           - Trichomonas vaginalis G3
          Length = 1023

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 165 LIPPKKGIKNHALDSLSMIVLDDDVGHPSTDKPV 266
           LI  K GI  H LD L+ ++LDD   HP  D  +
Sbjct: 231 LIIQKAGISTHVLDHLTDLILDDVTTHPMYDPDI 264


>UniRef50_P32857 Cluster: Protein PTM1 precursor; n=5;
           Saccharomycetales|Rep: Protein PTM1 precursor -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 531

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 123 IGDLADFDDVSDVILIPPKKGIKNHALDSLSMIVLDDDVGHPSTD 257
           +GDL  FDD  D  +I  ++GI     D L++   DD+ GH + +
Sbjct: 467 LGDLQSFDDQDDASIITGERGIDE---DDLNLNFTDDEEGHDNVN 508


>UniRef50_A2AX39 Cluster: Peptidyl-prolyl cis-trans isomerase; n=1;
           Guillardia theta|Rep: Peptidyl-prolyl cis-trans
           isomerase - Guillardia theta (Cryptomonas phi)
          Length = 347

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 320 EKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQNILDNAFMKLELDP-KHK 484
           EKCF     DG A  V R ++GLY  TCP  ++++ F+ +      ++++DP KHK
Sbjct: 167 EKCFLDIQIDGEA--VGRIVIGLYGKTCP--RTAYNFRALCTG---EVQVDPEKHK 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,731,200
Number of Sequences: 1657284
Number of extensions: 12758594
Number of successful extensions: 27274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27269
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)