Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    32   0.074
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.6  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    28   1.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.7  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 266 DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQNILD 445
           D+ Y++I +   + ++ +       N+D M  + N    GL++   PE + S ++ ++L 
Sbjct: 77  DVTYEEIIIQRNHAIELLRSASHDNNTDAMLYLANIEFFGLFE-IIPEIEDSVKYYDMLQ 135

Query: 446 NA 451
            A
Sbjct: 136 KA 137


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 299 KNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQNILDNAFMKLELDP 475
           KN +  + K   +  +DG+        L   +   PEY      + ILDNA +K+  DP
Sbjct: 205 KNNITVVHKATIMRMADGL-------FLECAKELAPEYPDIELREEILDNACLKIVTDP 256


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKH 481
           Y N    Y    +F+N +++A   L LDP H
Sbjct: 120 YSNRAAAYNQLGQFENAVEDALTCLSLDPHH 150


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 647 NLDFFFETPSTGDLL*RAVSSFNLS 573
           N D  FETP  GD L  AV +FN++
Sbjct: 420 NTDNLFETPDEGDGLSSAVFNFNVA 444


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -2

Query: 399 VFWYKPNNVRLTILAIPSE 343
           + W+KP++ R+ ++AIP+E
Sbjct: 481 IVWFKPSDKRVPLIAIPTE 499


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 683 MFAPLSSKFIKLNLDFFFETPSTGDLL*RAVSSFNLSC--KAVDIVISLAFFLTL*SFNA 510
           +F P S +   L +D   + P   DL    V S+ +SC  K  D+ +S  +   L S   
Sbjct: 13  VFLPFSKRVENLKIDVAHKIPRAADLEDEDVESYFISCLRKWEDLNLSTHYVNFLRSVTP 72

Query: 509 YTHLL 495
           Y+  L
Sbjct: 73  YSQSL 77


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 674  PLSSKFIKLNLDFFFETPSTGDL 606
            P+S + IK++LDF   +P+ GD+
Sbjct: 2156 PISYQEIKVDLDFALRSPNPGDI 2178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,737
Number of Sequences: 5004
Number of extensions: 61301
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)