Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0)               31   1.3  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)                30   2.2  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      29   3.0  
SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5)             29   3.0  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   5.2  
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   6.8  

>SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0)
          Length = 820

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 290 LDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQ--NILDNAFMKL 463
           L   +LVK  E C A +     A++ N+ LL   Q  CPE+K    F+  + ++  + KL
Sbjct: 231 LSTADLVKLKELCPAFKEGCPFAKMDNKELLEQIQR-CPEFKEGCAFKKAHSMEEIYYKL 289

Query: 464 ELDPK 478
           +  P+
Sbjct: 290 QEMPE 294


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKH 481
           YQN    Y+  ++F+N+++ A   LEL+ K+
Sbjct: 183 YQNRAAAYEQMNQFENVVEEATKALELNSKY 213


>SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)
          Length = 227

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 479 VLDLTLTS*RHCPKYFETDVNFCTQDMCSGTSLIMCD*QFS 357
           +LD+T      CP   + D++ C  D CSG+SL +   +FS
Sbjct: 2   ILDITKNGLTKCPPKSKGDIDLC-DDECSGSSLRVHPQEFS 41


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 351  PSEFSRAKHFSINFTKFLLSKNILSYFMSQVCQYLDVQRHHLRL 220
            P++ S AK   I +T F      L + +     Y+D+Q+ HLRL
Sbjct: 963  PTDVSIAKGHYIAYTPFDKGDKHLEWVIPDSVSYIDLQKTHLRL 1006


>SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5)
          Length = 292

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 378 NVRLTILAIPSEFSRAKHFSINFTKFLLSKNILSYFMSQVCQYLDVQRHHLRLS 217
           N + T++ + + ++  +   +  +K  LSKN  + F+ +   Y     H LRLS
Sbjct: 193 NTQATLIQVHTGYAYPRTHRLRLSKLHLSKNTQATFIQEYTGYAYPSTHRLRLS 246


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +2

Query: 101 CLVKSRNDWRFSRLRRCQRRDFNTTKKGDKESCT*LIKHDSLR**RWTSKY*QTCDIKYD 280
           CL  +  DWR   L   +  DF T KKG       L K  S    +    +      +Y 
Sbjct: 332 CLGVTEGDWRALALDALEGLDFETAKKGKFHDAAKLYKKTSNE-EKAMEMFSDLRQFEYA 390

Query: 281 KIFL---DNKNLVKFIEK 325
           K FL   D KN+ + I+K
Sbjct: 391 KEFLGASDPKNVKQLIKK 408


>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 351  PSEFSRAKHFSINFTKFLLSKNILSYFMSQVCQYLDVQRHHLRL 220
            P++ S AK   I +T F      L + +     Y+D+Q+ HLRL
Sbjct: 1181 PTDVSIAKGHYIAYTPFDKGDKHLEWVIPDSESYIDLQKTHLRL 1224


>SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 135 ADFDDVSDVILIPPKKGIKNHALDSLSMI-VLDDDVGHPSTDKPV 266
           AD   V+D + + P + I   +L ++S   V D D  HPS  KPV
Sbjct: 419 ADECMVTDTVALVPMQFIAYFSLTNISRFEVTDADYAHPSDCKPV 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,740,287
Number of Sequences: 59808
Number of extensions: 425548
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)