Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37548-3|AAA79199.1|   71|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U37548-3|AAA79199.1|   71|Caenorhabditis elegans Hypothetical
           protein C54D2.2 protein.
          Length = 71

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 286 YFIIFYVTGLSVLGCPTSSSKTIMLN 209
           +F +F +  ++VL  PTS SK+ MLN
Sbjct: 6   HFFLFVILTVAVLSIPTSYSKSKMLN 31


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKHKFSHIKGVCMH*NFIKL 532
           +QN       S   +N+  NAF+KL++D K    +        NF+KL
Sbjct: 33  FQNALLSLPMSETDKNVGFNAFLKLQVDIKESLKNYSKFGKKSNFLKL 80


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKHKFSHIKGVCMH*NFIKL 532
           +QN       S   +N+  NAF+KL++D K    +        NF+KL
Sbjct: 33  FQNALLSLPMSETDKNVGFNAFLKLQVDIKESLKNYSKFGKKSNFLKL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,321
Number of Sequences: 27780
Number of extensions: 340173
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)