Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.1  

>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 272 KYDKIFLDNKNLVKFIEKCFALENSDGMARIVN 370
           KYD + L    +V F   C A  +S G  +IVN
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTDSSGAVKIVN 438


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 272 KYDKIFLDNKNLVKFIEKCFALENSDGMARIVN 370
           KYD + L    +V F   C A  +S G  +IVN
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTDSSGAMKIVN 438


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = -1

Query: 340 LQSKTFFYKFY*ILIV*KYFIIFYVTGLSVLGCPTSSSKTIMLNESSAXXXXXXXXXIKI 161
           L+ +  FY F  IL      I+     L V   P+ S + + L  S+          I+ 
Sbjct: 209 LRRRPMFYVFNLILPC----ILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIR- 263

Query: 160 TSLTSSKSAKSPIISTFYQTILCYVT 83
            SL  ++  K+P+IS +Y   +C VT
Sbjct: 264 ESLPPTE--KTPLISLYYGVSICLVT 287


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 11 DTETHIFYGFHF 46
          D E H+FYG  F
Sbjct: 56 DKEVHVFYGIPF 67


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 11 DTETHIFYGFHF 46
          D E H+FYG  F
Sbjct: 56 DKEVHVFYGIPF 67


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 405 GHVFWYKPNNVRLTILAIPSEFSRAKHFSINFTKF 301
           G  F ++     ++ILAI   +      S+NF  F
Sbjct: 167 GVYFAFRDQGACISILAIKVYYISCPEISVNFAHF 201


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 RFSRLRRCQRRDFNTTKKGDKE 193
           R+SR RRC R      +K D++
Sbjct: 230 RYSRERRCSRDRNREYRKKDRQ 251


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 423 CELLYSGHVFWYKPNNVRLTILAIPS 346
           C++   G V W  P   RL  + I S
Sbjct: 345 CQMDSGGPVLWQNPRTKRLVNIGIIS 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,030
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)