Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00879
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57730.1 68416.m06431 protein kinase, putative contains prote...    29   3.2  
At4g21230.1 68417.m03070 protein kinase family protein contains ...    29   4.2  
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    28   5.6  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    28   7.4  
At4g33050.3 68417.m04705 calmodulin-binding family protein conta...    27   9.8  
At4g33050.2 68417.m04703 calmodulin-binding family protein conta...    27   9.8  
At4g33050.1 68417.m04704 calmodulin-binding family protein conta...    27   9.8  
At2g39660.1 68415.m04864 protein kinase, putative similar to pro...    27   9.8  

>At3g57730.1 68416.m06431 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 355

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 266 DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEY 412
           D+K   +FLDN    K  +  F++   +G ++I    +LG Y    P Y
Sbjct: 196 DVKPLHVFLDNNWTAKLSDLSFSISLEEGKSQIEAEDVLGTYGYLDPLY 244


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 266 DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRF 430
           D+K   + LD + L K  +   A +      + V R ++G Y    PEY    RF
Sbjct: 458 DLKSSNVLLDEQMLPKISDFGMARQFDFDNTQAVTRRVVGTYGYMAPEYAMHGRF 512


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 386 LYQNTCPEYKSSHRFQNILDNAFMKLELDP 475
           LY N    Y S HR++  L +A   +EL P
Sbjct: 38  LYSNRSASYASLHRYEEALSDAKKTIELKP 67


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 305 LVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQ 433
           ++KF+ KCF LE  +   + V    L   Q  C   + S  F+
Sbjct: 628 MIKFLVKCFELEMEESNTQAVGTEFLDSAQKMCSLLEHSLAFE 670


>At4g33050.3 68417.m04705 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 295

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKHKFSH 493
           YQ   P   S    +  L    +KL++DP+H++ H
Sbjct: 210 YQRQVPYLTSKAIIEYTLMIHLLKLQIDPRHRYGH 244


>At4g33050.2 68417.m04703 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 526

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKHKFSH 493
           YQ   P   S    +  L    +KL++DP+H++ H
Sbjct: 210 YQRQVPYLTSKAIIEYTLMIHLLKLQIDPRHRYGH 244


>At4g33050.1 68417.m04704 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 374

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 YQNTCPEYKSSHRFQNILDNAFMKLELDPKHKFSH 493
           YQ   P   S    +  L    +KL++DP+H++ H
Sbjct: 210 YQRQVPYLTSKAIIEYTLMIHLLKLQIDPRHRYGH 244


>At2g39660.1 68415.m04864 protein kinase, putative similar to
           protein kinase gi|166809|gb|AAA18853
          Length = 395

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 266 DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSS 421
           DIK   I LD     K  +   A +   G    V+  ++G Y    PEY SS
Sbjct: 202 DIKASNILLDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSS 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,116
Number of Sequences: 28952
Number of extensions: 297311
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)