Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00878
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.54 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   5.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.7  

>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 752 TTSEPIYRHNPPSFSSDLLSESRFPLLIPKLN 657
           T + P+  HNP S+ +++ + + F + +PK N
Sbjct: 118 TGNPPVDTHNPLSYDTEVTATTTFSIALPKFN 149


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 752 TTSEPIYRHNPPSFSSDLLSESRFPLLIPK 663
           +T+ P +  NPPS  +D+  +  F   +PK
Sbjct: 173 STNNPYFPDNPPSPKADISKDEYFGKYLPK 202


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 193 PPYSSERLDAWKYYFLILNSTIYCNYAKLIRSYLS*KW 306
           P  S E +D WK  +++LN  ++   +     +L  KW
Sbjct: 553 PMLSYEAIDYWKSLYILLNENLFVGQSSFKSVFL--KW 588


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 518 TEHENFVGVYQL*YNKRIHTSLNGADVLHNFRD*CIILN 402
           T + N++      Y K++++ LNG   L N  D    LN
Sbjct: 458 TNYYNYIPDVPYKYAKKLYSILNGGSTLRNVNDYLAALN 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,996
Number of Sequences: 5004
Number of extensions: 65263
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)