Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00878
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)               28   9.5  

>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 530 SIFGYVKSKLIESWLVIHFISIVTLFL 610
           S+FGY++   +E WL + F+SI  +F+
Sbjct: 514 SLFGYLRHLNLELWLTLLFLSISMIFI 540


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 225  EILLSYFKLYNILQLRKIDKIVSLVKMVRPPAHPNSYGII*RAKPRGY 368
            +IL S    Y+I  + +   ++ +V +V   AHP  Y ++  A+  GY
Sbjct: 1484 DILYSLQTDYDIFAINQTSGVIRVVALVDREAHPAGYSLLVVARDHGY 1531


>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
          Length = 388

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -1

Query: 173 CKIKKFVFLLPCDIPL*SRTTKFKLLIKFLIEHFLTVEKQPRLSRS 36
           C ++++  L     P   +T +FK+L + L+EH+++V +  RL R+
Sbjct: 47  CGLRQYETLRDLVSPEVPKTVEFKVLKETLVEHYVSV-RNTRLERT 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,718,778
Number of Sequences: 59808
Number of extensions: 440673
Number of successful extensions: 980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)