Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00878
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z82073-7|CAB04922.2|  327|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 503 NFHVPSLLKSIFGYVKSKLIESWLVIHFISIVTLFLENIIIC 628
           N+  P+LL   FGY   ++++  LV H I ++      +  C
Sbjct: 85  NYMYPNLLWETFGYTIPRILQILLVFHSIPVIGSLSRTVFGC 126


>Z82073-7|CAB04922.2|  327|Caenorhabditis elegans Hypothetical
           protein W06D12.1 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 491 THPQNFHVPSLLKSIFGYVKSKLIESWLVIHFISIVTLFLENIII 625
           T  + FHVP+   +   + ++ LI S L++  + IVT+ L  ++I
Sbjct: 260 TGNRKFHVPTNASNDVCFTRTNLILSLLILAALGIVTISLMYLVI 304


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 490 YTPTKFSCSVFTKIDFWLCKIEINRIVVGYTF--HINCNFVS*EHYHLLNLLHGKS 651
           Y P +FS S+F  I+F+     +   +V Y    H N + V  E  H + ++ G S
Sbjct: 176 YYPPRFSVSMFFLINFFFTCAAVAAFLVLYKIGAHKNSSQVEPEPKHSIQIIQGDS 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,351
Number of Sequences: 27780
Number of extensions: 364793
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)