Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00877
         (768 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein P0459B...    48   3e-04
UniRef50_Q7RAM2 Cluster: Putative uncharacterized protein PY0647...    42   0.017
UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;...    35   1.9  

>UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein
           P0459B01.16; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0459B01.16 - Oryza sativa subsp. japonica (Rice)
          Length = 172

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = +2

Query: 689 RAPWLILPVVICLSQRLSHACLS 757
           RA WLILPVVICLSQRLSHAC S
Sbjct: 148 RATWLILPVVICLSQRLSHACAS 170


>UniRef50_Q7RAM2 Cluster: Putative uncharacterized protein PY06477;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06477 - Plasmodium yoelii
           yoelii
          Length = 58

 Score = 41.9 bits (94), Expect = 0.017
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 638 FLRPMRCDVLVFE-LTKKRAPWLILPVVICLSQRLSHA 748
           +++ ++ ++L+F  L      WLILPVVICLSQRLSHA
Sbjct: 2   YIKIIKYNILIFHILLILIVTWLILPVVICLSQRLSHA 39


>UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;
           n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 508

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 4/27 (14%)
 Frame = +2

Query: 689 RAPW---LILPVV-ICLSQRLSHACLS 757
           RAPW   L+ P   ICLSQRLSHACLS
Sbjct: 416 RAPWRGYLVDPASSICLSQRLSHACLS 442


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,865,651
Number of Sequences: 1657284
Number of extensions: 11024200
Number of successful extensions: 19721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19721
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)