Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00877
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   5e-06
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   5e-06
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       36   0.036
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       36   0.036
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   9.5  
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 683 KKRAPWLILPVVICLSQRLSHACLSAS 763
           ++ A WLILPVVICLSQRLSHACLS S
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSIS 152


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 683 KKRAPWLILPVVICLSQRLSHACLSAS 763
           ++ A WLILPVVICLSQRLSHACLS S
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSIS 128


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 683 KKRAPWLILPVVICLSQRLS 742
           ++ A WLILPVVICLSQRLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 683 KKRAPWLILPVVICLSQRLS 742
           ++ A WLILPVVICLSQRLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 167 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 9
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 443 NV*IKTPYEIL*FVLTNKISKSRHGTYRMT*TTERTGAF 327
           NV IK+   I    LT KIS ++ GTY++  T  +TG +
Sbjct: 412 NVRIKSDQNI---TLTAKISNNKDGTYKVNYTPLKTGTY 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,430,050
Number of Sequences: 59808
Number of extensions: 363263
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)