Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00877
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.77 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 420 IWCFYLNIICF-NVNGLCEISVDRFC 494
           +W  +  + C  ++  LC ISVDRFC
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFC 141


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 LFVQSFTSFCTFRGAILKFYSLK 403
           LFV  FT +  +R A+++  SLK
Sbjct: 219 LFVMVFTYYKIYRAAVIQTKSLK 241


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  SEVSIHLSYISCPVRSLTYIH 72
           S ++I + YISCP  S+ + H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 508 KRIIIQNRSTEISHKPFT 455
           K  +I+ R   ++HKPFT
Sbjct: 482 KNTMIKARQYRLNHKPFT 499


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 508 KRIIIQNRSTEISHKPFT 455
           K  +I+ R   ++HKPFT
Sbjct: 482 KNTMIKARQYRLNHKPFT 499


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 508 KRIIIQNRSTEISHKPFT 455
           K  +I+ R   ++HKPFT
Sbjct: 108 KNTMIKARQYRLNHKPFT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,807
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)