Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00876
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    31   0.13 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    31   0.17 
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    30   0.29 
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   3.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.2  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    26   6.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.2  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    25   8.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   8.2  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 324 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
           ID +E VET+   P KKE  +K EK+ +  +K+
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKK 477


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 505 GKKELLSRKLGNNCDLK*KHSWVYLHSIVYTCRKEECWTK 624
           G + L+  K  +  DL    +W Y HS+V+     ECW K
Sbjct: 605 GTEPLVGLKTASEEDLP---TWYYRHSLVFVSSSNECWKK 641


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +3

Query: 387 KLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKAMEREKRIIIQETWKQLRSKIKTF 566
           K+E       +++F +    + F T    + G +  AM+  +R +  +   Q+  KI+  
Sbjct: 76  KIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAE--AMKSIQRGMDADKVDQIMDKIRDQ 133

Query: 567 MGIPAQYSVYLQERGMLDKELDEDELKNK 653
             I  + S  +     L+ E+DEDEL N+
Sbjct: 134 QTISEEISTMISTPVGLNAEIDEDELANE 162


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 294 IQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 407
           +++    V ++DS+E+ E+     P++E  + +EK  K
Sbjct: 50  VEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 590 TILCRYTHECFYFRSQLFPSFLD 522
           T  CRYT    ++ SQL P F D
Sbjct: 354 TFRCRYTQFLIFWASQLDPEFTD 376


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 375 EVAEKLEKQAKA-PRKRMFMLPKGQVEFITYLLDKY 479
           +V + L K + A P + + +L   + EFITYLLD Y
Sbjct: 563 QVHDFLAKNSDAIPDEFISLLQNSKNEFITYLLDFY 598


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 327 DSDEEVETVV--RLPPKKEVAEKLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKAM 500
           ++ + V+TV    LPP   + E L      P +  ++LP+    FI++L   +   +   
Sbjct: 109 NTTQPVKTVYVGNLPPNTPIDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQD 168

Query: 501 EREKRIIIQET 533
              KR+ I+ T
Sbjct: 169 AALKRLTIRGT 179


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 507 EKRIIIQETWKQLRSKIKTFMGIPAQY 587
           E+RI  Q T  QL++K+   +G P QY
Sbjct: 16  ERRINPQWTVSQLKTKLVPIVGTPEQY 42


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 486 DYKAMEREKRIIIQETWKQLRSKIKTFMGIPAQYSVYLQERGMLDKELDE 635
           DY++++ ++ +      +QLR+  K  +    +Y +   ER +L+ EL +
Sbjct: 47  DYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQ 96


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 130 RRRMNRKQKST--GNVQCSIVKEAWNNKKTSARNLREMGLVSDP 255
           RR  N+K K+   GN    ++++ W+   T  +N   +GL++ P
Sbjct: 19  RRNANKKAKAKIYGNF---VIQQNWDKHATLRQNYARLGLLATP 59


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 281 QTDSNSKGETN-GKPDRFR*RSGNSCKTSTKEGSSREIR 394
           ++D +   ETN   PD+ R  +    K STK+G SR+ R
Sbjct: 499 ESDDSQIAETNFATPDKDRLTTSLLDKGSTKDGLSRKAR 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,342
Number of Sequences: 5004
Number of extensions: 51191
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)