Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00876
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190...    33   0.17 
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    30   1.6  
12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952     30   2.1  
01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109     30   2.1  
06_03_0428 + 20692616-20692629,20692895-20693717                       29   2.8  
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879...    29   4.9  
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121     28   8.6  

>11_03_0184 +
           11317787-11318198,11318337-11318671,11318756-11319048,
           11319125-11319483,11319549-11319748,11319823-11320012,
           11320084-11320188,11320262-11320338,11320428-11320649
          Length = 730

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 330 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLPKGQV 449
           SD+E +   R P  +E  +KL KQA  PRK+ F  P  ++
Sbjct: 304 SDDEADDTTRKPGDRETTKKLPKQA-TPRKKTFSRPAPKI 342


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 312 MVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKA 410
           +V Q DS++E E + R+  KK  + K EK AKA
Sbjct: 521 VVEQSDSEDEREQLTRIAKKKADSGKKEKSAKA 553


>12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952
          Length = 343

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLP 437
           SD+E +   R P  +E  +KL KQA  PRK+    P
Sbjct: 283 SDDEADDTTRRPGDRETTKKLPKQA-TPRKKTSSRP 317


>01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109
          Length = 270

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 330 SDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
           SD+E +   R P  +E  +KL KQA  PRK+
Sbjct: 210 SDDEADDTTRRPEDRETTKKLPKQA-TPRKK 239


>06_03_0428 + 20692616-20692629,20692895-20693717
          Length = 278

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 273 PNFKQTQIQRAKQMVNQIDSD---EEVETVVRLPPKKEV 380
           P    ++  RA  +V Q+D D   EE+E +V LPP  E+
Sbjct: 168 PQASPSEAARAHALVAQVDQDDDDEELEEIVELPPIDEL 206


>01_01_1111 -
           8791925-8792649,8793506-8793890,8794341-8794618,
           8794998-8795163
          Length = 517

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 256 LDHLQDPFPLDFEQKFFYYSMLP*QLNIERSLYFFVSYSYAVDLTCV 116
           L+ L DPF  D EQ      + P + N+E S+ FF    +AV   C+
Sbjct: 237 LNELFDPF-FDPEQSLASADLSPDEQNVESSVSFFTVTVFAVLSLCI 282


>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
          Length = 499

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 369 KKEVAEKLEKQAKAPR-KRMFMLPKGQVEFITYLLDKYGNDYKAM 500
           ++++AE     AK    + + M+ K +VE++T +L   G DY A+
Sbjct: 370 EQKLAEDARLYAKQKEAEALAMVGKAKVEYVTSMLQALGGDYGAL 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,192
Number of Sequences: 37544
Number of extensions: 287504
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)