Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00876
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.001
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06)                  29   2.9  
SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_58620| Best HMM Match : XH (HMM E-Value=1.6)                        29   5.0  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   5.0  
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               28   6.6  
SB_32879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)                    28   6.6  
SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55)                    28   8.8  

>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 30.3 bits (65), Expect(2) = 0.001
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 492 KAMEREKRIIIQETWKQLRSKIKTFMGIPAQYSVYLQE 605
           KAM ++K    Q T KQL+ K + F+     +S YL++
Sbjct: 74  KAMSKDKENYYQHTPKQLKRKCEAFLRSSQDFSEYLKD 111



 Score = 29.5 bits (63), Expect(2) = 0.001
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 375 EVAEKLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKA 497
           +V ++ E  A    K+   +  G+  F+  L+ K+G DYKA
Sbjct: 9   DVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKA 49


>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 318 NQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
           NQ D DE+ ET       +E+A+ LEK  K P KR
Sbjct: 84  NQTDQDEDEETNSFKITAEEIAKNLEKYKKRPAKR 118


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/102 (19%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
 Frame = +3

Query: 333 DEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKAMEREK 512
           +EE +  V +  +K   E    ++K  +K+     KG+ + I  ++++  ++ +  +   
Sbjct: 39  EEEEDGKVEVVEEKAAEEVKVTKSKGKKKKSKKPKKGKKKKIVKVIEEEEDEEEEEDPNA 98

Query: 513 RIIIQETWKQLRSKIKTFMG--IPAQYSVYLQERGMLDKELD 632
           +I ++ET+     + KT +G  +   Y+ ++Q+  + D   D
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRD 140


>SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06)
          Length = 247

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +3

Query: 465 LLDKYGNDYKAMEREKRIIIQ----ETWKQLR--SKIKTFMGIPAQYSVYLQERGMLDKE 626
           L D+  + YKA +R+K +II     +T+  L       T MG+    S Y+ +  M D E
Sbjct: 5   LFDELTSSYKA-DRQKGVIISISEFQTYHDLNLDCNFLTIMGVYNAVSHYVNKAAMADDE 63

Query: 627 LDEDELK 647
              DE+K
Sbjct: 64  QPMDEVK 70


>SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 453 FITYLLDKYGNDYKAMEREKRIIIQETWKQL-RSKIKTFMGIPAQYSVYLQERGMLDKEL 629
           F   L++    D + +  EKR ++ +   QL ++  + F   P +   +LQE G+L   L
Sbjct: 484 FFKKLMEILTMDMQGVHYEKRELVLDAINQLLQAGSEHFNNKPKKGIEFLQEHGLLHTPL 543

Query: 630 DEDEL 644
           D +E+
Sbjct: 544 DPEEM 548


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/52 (25%), Positives = 31/52 (59%)
 Frame = +3

Query: 264 IKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 419
           +++   K+ + ++  +   ++++++EVET   +  KKEV  + EK+ +  RK
Sbjct: 25  MEVETEKEVETEKEVETEKEVETEKEVETEKEVETKKEV--ETEKEVEGSRK 74


>SB_58620| Best HMM Match : XH (HMM E-Value=1.6)
          Length = 376

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 272 TKFQTDSNSKGETNGKPDRFR*RSGNSCKTSTKEGSSREIRKTGQGASEKDVYVT*GSG* 451
           T   TD   +  T    D    R G +  TST E     I  + +G   + + V   +G 
Sbjct: 203 TTTSTDEPGRDRTTTSTDEPG-RDGTTTSTSTNEPGRNRITTSAEGLPHRQIDVPMSTGK 261

Query: 452 IYHIFIRQIWQRLQSYGKGK 511
            YH  I    Q  +  G G+
Sbjct: 262 NYHQDITNQTQEQKKIGGGQ 281


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 273  PNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVA 383
            P F + + Q A  +V + DS+ E+  VVR  PK EVA
Sbjct: 4647 PFFPEDEGQGAVPVVTRQDSEVELGAVVRGSPKPEVA 4683


>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
 Frame = +3

Query: 327 DSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR----MFMLPKGQVEFITYLLDKYGND-- 488
           D DE+VE       KK++   ++K +    K+     F  PK   EF T ++ K+  D  
Sbjct: 354 DEDEQVEISNAKKHKKDLMSSVKKSSSVAAKKELPFTFNAPKNYSEF-TSMISKWKRDDA 412

Query: 489 YKAMEREKRIIIQETWKQLRSKIKTFMGIPAQY 587
              +ER K     +   + +SK++ F  I  ++
Sbjct: 413 LTIIERIKACNHPKILPENKSKMEIFFSILLEF 445


>SB_32879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 426 FMLPKGQVEFITYLLDKYGNDYKAMEREKRIIIQETWKQLRSKI 557
           F++  G   F   LLD+   +YKA+E++ +  + E +K+  S++
Sbjct: 71  FIVTLGNKLFSAKLLDRTTPEYKALEKQVKESVIELYKEAASEL 114


>SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 166 NVQCSIVKEAWNNKKTSARNLREMGLVSDPTKL*KYQIS 282
           NV C+    +WN  K   +N + + L   PTK  + +IS
Sbjct: 516 NVSCTSTDCSWNKGKKRTKNPQRLSLAKYPTKKKQEKIS 554


>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
          Length = 453

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/97 (21%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
 Frame = +3

Query: 270 IPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLPKGQV 449
           +   +Q Q + A+Q+  +  + +E+    R   + ++ ++ ++  +  R++   L + + 
Sbjct: 26  LEELEQKQREAAEQLEQERKAMQEIIEKEREEERLKLEKEHQRMEEQQRQQQEALKQAEE 85

Query: 450 EFITYLLDKYGNDYKAMEREK-RII-IQETWKQLRSK 554
           E    L ++   + + M+REK R++ +Q+ +KQ+RSK
Sbjct: 86  ERAR-LREQLIREREVMQREKSRLMKLQQDYKQIRSK 121


>SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55)
          Length = 319

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 341 FFI*IDLVYHLFRPLNLSLFEIWYFYSF 258
           +F+ + L++H+ + L +S FE + FY F
Sbjct: 9   WFVYVALLWHIVQVLRVSAFESYLFYDF 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,256
Number of Sequences: 59808
Number of extensions: 340530
Number of successful extensions: 1048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)