Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00876
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical pr...    44   8e-05
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    31   1.1  
U40409-7|AAA81386.3|  304|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    29   4.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   4.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   4.4  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    28   7.7  

>Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical
           protein ZK265.6 protein.
          Length = 189

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 387 KLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKAMEREKRIIIQETWKQLRSKIKT 563
           K E++A+A + R F L   + E   Y+L ++G D++AM R+ + + Q T KQ   KI+T
Sbjct: 118 KEEEEARAGQDRKFRLFHRETELCVYMLARHGEDFQAMTRDPKNLWQYTPKQWAKKIRT 176



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 130 RRRMNRKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDP 255
           +++ N+K+ S   V   I+K  W+  KT   N+R+MG+  +P
Sbjct: 24  KKKDNKKKLSKSAVP--IIKYTWDETKTPRENVRDMGIAFNP 63


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 306  KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLP 437
            ++ V+Q+D  E++E V  + PK EV +  ++  +   KR  +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 306  KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLP 437
            ++ V+Q+D  E++E V  + PK EV +  ++  +   KR  +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 306  KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLP 437
            ++ V+Q+D  E++E V  + PK EV +  ++  +   KR  +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902


>U40409-7|AAA81386.3|  304|Caenorhabditis elegans Hypothetical
           protein F32A6.2 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 465 LLDKYGNDYKAMEREKRIIIQETWKQLRSKIKTFMGIPAQYSVYLQERG 611
           LLD    D K+ME+EK+I++++  ++   K++       Q  + LQ RG
Sbjct: 167 LLDDIKEDLKSMEKEKQILLRKI-EKTEKKVQNIPYFDKQMQLALQLRG 214


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 507 EKRIIIQETWKQLRSKIKTFMGIPAQYSVYLQERGMLDKELD 632
           E+  IIQE+W+Q+ +     +G PA Y+  L   G      D
Sbjct: 203 EELEIIQESWRQVYTTANVGLGTPATYTANLWTDGSCTNNAD 244


>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 365 WKSYNCFHFF-I*IDLVYHLFRPLNLSLFEIWYFYSFVGSL 246
           W   NC  +  + ID +  +  P++   F IWY++ F+G L
Sbjct: 363 WLCMNCKDWTALKIDQMSSIVFPVSFLAFNIWYWFIFLGKL 403


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 356 YNCFHFFI*IDLVYHLFRP----LNLSLFEIWYFYSFVGSLTRPISLRFRAEVFL 204
           +N F FF+ +    H   P    L LSLF+++  ++++  ++  I + F + VFL
Sbjct: 61  FNTFIFFVFVTNKQHRRSPNLYLLLLSLFDVFIAFAYIAVMSVRILVNFTSSVFL 115


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276   NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
             N K+T +++ AK+   Q + DE+++    +  KK  AEKLE + +A  K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 282   KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 419
             K+   Q+ +++  Q D DE+  T    PPK E +E   K+    +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276   NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
             N K+T +++ AK+   Q + DE+++    +  KK  AEKLE + +A  K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 282   KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 419
             K+   Q+ +++  Q D DE+  T    PPK E +E   K+    +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 354 VRLPPKKEVAEKLEKQAKAPRKRMFMLPKGQ 446
           V+ PPKK + +K++K  +AP+       KG+
Sbjct: 199 VKSPPKKMIIQKIQKHQEAPKPAKVPKIKGE 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,530
Number of Sequences: 27780
Number of extensions: 278943
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)