Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00876
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 630 PILCPAFLFPAGIH 589
           P+LCPA  FP  +H
Sbjct: 231 PLLCPAQGFPVPVH 244


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 127  NRRRMNRKQKSTGNVQCSIVKEAWNNKKTSAR 222
            +RRR  RKQ++ G+V+ S   E+  ++ TS+R
Sbjct: 1766 SRRRQQRKQQTPGDVE-SDESESDPDQLTSSR 1796


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 127  NRRRMNRKQKSTGNVQCSIVKEAWNNKKTSAR 222
            +RRR  RKQ++ G+V+ S   E+  ++ TS+R
Sbjct: 1762 SRRRQQRKQQTPGDVE-SDESESDPDQLTSSR 1792


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 465 LLDKYGNDYKAMEREKRIIIQETWKQLRS 551
           L  ++ +DY     EK+I     W++LR+
Sbjct: 196 LSSEWDSDYTDKSNEKKIPKSSGWRKLRN 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 344  HFFI*IDLVYHLFRPLNLSL 285
            HF   ID   H++ PL +SL
Sbjct: 990  HFISGIDSNLHVYAPLKISL 1009


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 329 IDLVYHLFRPLNLSLFE 279
           ID V HLF   N+SL E
Sbjct: 229 IDAVPHLFESANISLDE 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,104
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)