Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00876
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43580.1 68414.m05003 expressed protein 34 0.082
At4g11910.1 68417.m01894 expressed protein hypothetical protein ... 33 0.25
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 31 0.58
At5g45080.1 68418.m05528 disease resistance protein-related weak... 31 0.77
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 31 0.77
At4g33600.1 68417.m04773 expressed protein 31 1.0
At4g22920.1 68417.m03310 expressed protein 30 1.3
At1g33670.1 68414.m04165 leucine-rich repeat family protein cont... 29 2.3
At3g59140.1 68416.m06593 ABC transporter family protein putative... 29 3.1
At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH) domain... 29 3.1
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com... 28 5.4
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 28 5.4
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 28 5.4
At5g40520.1 68418.m04916 expressed protein 28 7.2
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 7.2
At2g20590.2 68415.m02408 reticulon family protein non-consensus ... 28 7.2
At2g20590.1 68415.m02407 reticulon family protein non-consensus ... 28 7.2
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 27 9.5
At5g18510.1 68418.m02185 hypothetical protein 27 9.5
At5g13130.1 68418.m01504 hypothetical protein low similarity to ... 27 9.5
At3g16270.1 68416.m02053 expressed protein gene model 27 9.5
>At1g43580.1 68414.m05003 expressed protein
Length = 421
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 282 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
KQT++++ + + D ++ETV RL + EV+ ++EKQ+K R
Sbjct: 348 KQTKLEKIQNSLIHAAKDGDIETVRRLVEEIEVSSRVEKQSKVISNR 394
>At4g11910.1 68417.m01894 expressed protein hypothetical protein
F7H19.100 -Arabidopsis thaliana,PID:e1310060
Length = 466
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 532 LGNNCDLK*KHSWVYLHSIVYTCRKEECWTKNWMKMN 642
L N+ +L+ WVY HS + K ECW W M+
Sbjct: 170 LNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEAMS 206
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 532 LGNNCDLK*KHSWVYLHSIVYTCRKEECW 618
L N +L WVY HS + K ECW
Sbjct: 363 LNNYPELHEAFVWVYFHSNIPKFNKVECW 391
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKK 374
IKI +++ Q+V ++ +E++E +RLPP+K
Sbjct: 237 IKIQLLADLSLKKMPQLVELVEDNEDIEEFLRLPPEK 273
>At5g45080.1 68418.m05528 disease resistance protein-related weak
similarity to disease resistance protein rps4-RLD
[Arabidopsis thaliana] GI:5823585; contains Pfam profile
PF01582: TIR domain
Length = 392
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +3
Query: 420 RMFMLP---KGQVEFITYLLDKYGNDYKAMEREKR--IIIQETWKQLRSKIKTFMGIP 578
R+ ++P K + + +L K+G++++A+ER R + I + WK+ I +G+P
Sbjct: 99 RLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHMLPITQKWKEALESIPGSIGMP 156
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKK 374
IKI +++ Q+V ++ ++VE ++RLPP+K
Sbjct: 236 IKIQVLADLNLKKTPQLVELLEDSDDVEELLRLPPEK 272
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 236 WVL*VIQQNY-KNTKFQT--DSNSKGETNGKPDRFR*RSGNSCKTSTKEGSSREIRKT 400
W+ +I Y +NT+F D N GE NG D R ++ + C S E S I T
Sbjct: 219 WLNEIITATYGQNTEFLRFRDKNRPGEKNGSLDLIRCKARHYCNISLSETSKSRIGMT 276
>At4g22920.1 68417.m03310 expressed protein
Length = 268
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 532 LGNNCDLK*KHSWVYLHSIVYTCRKEECWTKNW 630
L N +L+ WVY HS V K ECW W
Sbjct: 174 LNNYPELQEALVWVYFHSNVNEFNKVECWGPLW 206
>At1g33670.1 68414.m04165 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to receptor kinase-like
protein GB:AAB82755 GI:2586083 from [Oryza
longistaminata] (Science 270 (5243), 1804-1806 (1995))
Length = 455
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 390 ISRLLPSLVEVLQLFPLLHLNRSGLPFVSPFEFESV*NLVFL 265
+S +P + +L L+L+R+G V P F ++ N++FL
Sbjct: 237 LSGTIPDYLSRFELLSALNLSRNGYTGVVPMSFANLTNIIFL 278
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 145 RKQKSTGNVQCSIVKEA---WNNKKTSARNLREMGL 243
RKQ+S GN I+K A W K ++ NLR + L
Sbjct: 590 RKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSL 625
>At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related similar to clathrin assembly protein
AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
profile: PF01417 ENTH domain, suggesting involvement in
endocytosis or cytoskeletal machinery
Length = 379
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 333 DEEVETVVRLPPKKEVAEKLEK-QAKAPRKRMFML--PKGQVEFITYLLDKYGNDYKAME 503
+EEVE + ++ + KLEK + K K M +L PK IT + + +DY+ +
Sbjct: 282 EEEVEAIEKMIDTVQEKPKLEKDEEKEDEKAMVVLEQPKKLQTIITDKWEIFEDDYRCFD 341
Query: 504 R-EKRIIIQETWKQ 542
R +K I ++ + Q
Sbjct: 342 RKDKWEIFEDEYHQ 355
>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
component family protein contains Pfam profile PF01794:
Ferric reductase like transmembrane component
Length = 728
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 639 HLHPILCPAFLFPAGIHYTVQVYP*MFLF 553
HL+ + AFLF AG + V P MFLF
Sbjct: 271 HLYIVFLVAFLFHAGDRHFYWVLPGMFLF 299
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 282 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 422
K ++ + K +N + EE + V L KKE E LEK K KR
Sbjct: 670 KSSKRSKKKDSLNIV---EEAQVVDSLQQKKEAEENLEKSGKKSSKR 713
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 333 DEEVETVVRLPPKKEVAEKLEKQAKAPRKRMFMLPKGQVEFITYLLDKYGNDYKAMEREK 512
+E++ + +L K++ +L ++ + +K L K Q+E + L K G D +A+E +
Sbjct: 199 EEQLSLINQLNSAKDLVTELGRELSSEKKLCEKL-KDQIESLENSLSKAGEDKEALETKL 257
Query: 513 R 515
R
Sbjct: 258 R 258
>At5g40520.1 68418.m04916 expressed protein
Length = 693
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 145 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDP 255
R T N+Q IVK W +K R L+ + L DP
Sbjct: 290 RFSPETKNLQNEIVKAVWLLRKVRFRELKRLHLCLDP 326
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 486 DYKAMEREKRIIIQETWKQLRSKI 557
+Y + E +IIIQET K+ R+KI
Sbjct: 339 EYAVSKMEDKIIIQETGKETRNKI 362
>At2g20590.2 68415.m02408 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 323
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 297 QRAKQMVNQIDSDEEVETVVRLPPKKEVAE---KLEKQAKAP 413
+R + V + +++ +E +V+LPP+K K +KQ+ AP
Sbjct: 104 RRRSEAVEEKEANLVIEEIVKLPPRKRKTNGRPKKDKQSSAP 145
>At2g20590.1 68415.m02407 reticulon family protein non-consensus AA
donor splice site at 46485 and non-consensus GG acceptor
splice site at 46563, confirmed by Ceres cDNA 1885;
contains Pfam profile PF02453: Reticulon
Length = 431
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 297 QRAKQMVNQIDSDEEVETVVRLPPKKEVAE---KLEKQAKAP 413
+R + V + +++ +E +V+LPP+K K +KQ+ AP
Sbjct: 104 RRRSEAVEEKEANLVIEEIVKLPPRKRKTNGRPKKDKQSSAP 145
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 264 IKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKK 374
IKI +++ Q+V + ++VE ++ LPP+K
Sbjct: 237 IKIQLLADLNLKKTPQLVELVGDSKDVEELMSLPPEK 273
>At5g18510.1 68418.m02185 hypothetical protein
Length = 702
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 327 DSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 419
D D +++ ++PP +V +KLE+ A R+
Sbjct: 460 DDDGDIDVSTKVPPLSQVVQKLEEGFTAKRR 490
>At5g13130.1 68418.m01504 hypothetical protein low similarity to
microrchidia [Mus musculus] GI:5410255
Length = 706
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 288 TQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKA 410
+++QR KQ++ +S +++ + + +KEV E K++KA
Sbjct: 609 SELQRQKQLLELQESKAKIQNLEKAQREKEVLELQLKESKA 649
>At3g16270.1 68416.m02053 expressed protein gene model
Length = 690
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 296 SKGETNGKPDRFR*RSGNSCKTSTKEGSSRE 388
S G + PD F+ GN TST GS +E
Sbjct: 638 SGGNQSALPDIFQPNFGNQAPTSTMNGSKKE 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,402
Number of Sequences: 28952
Number of extensions: 252854
Number of successful extensions: 780
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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