Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.5  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 123 AVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPP 22
           A PY   +   PL  H A  V+   P  PH  PP
Sbjct: 716 ASPY---MLQSPLTPHEAFDVKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 123 AVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPP 22
           A PY   +   PL  H A  V+   P  PH  PP
Sbjct: 608 ASPY---MLQSPLTPHEAFDVKLPPPPHPHHQPP 638


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ESRANDVSPLRYEPQRRS 559
           +SR+N ++PL+ +PQ  S
Sbjct: 295 QSRSNRMTPLKLQPQNFS 312


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 506 ESRANDVSPLRYEPQRRS 559
           +SR+N ++PL+ +PQ  S
Sbjct: 291 QSRSNRMTPLKLQPQNFS 308


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 39  PHQVPPAKAQP 7
           PHQ PP + QP
Sbjct: 204 PHQQPPIQQQP 214


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 39  PHQVPPAKAQP 7
           PHQ PP + QP
Sbjct: 206 PHQQPPIQQQP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,091
Number of Sequences: 336
Number of extensions: 3630
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)