Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    56   4e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   5.1  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.7  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   8.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.9  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 30/74 (40%), Positives = 42/74 (56%)
 Frame = +2

Query: 254 YYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKA 433
           YYEDGNV L +S+ I A       V    +   +++  EN  Q + +    +++D  FK 
Sbjct: 178 YYEDGNVWLDASRPISAT------VEETSKLYEVLAQVENGIQQSFNVELSSLNDKKFKE 231

Query: 434 LRRQLPVTRSKIDW 475
           LRRQLPVTR KI+W
Sbjct: 232 LRRQLPVTRQKINW 245



 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 102 VDSGTVQLVACIEDHQFQPKNYWNGRWRSVWSLTVGGPATELRGTLRVQVH 254
           V+S T+ LV+     ++ PKNYWNG WR + +  V     E R  +RV  +
Sbjct: 133 VESFTIVLVSS----KYNPKNYWNGSWRCICNYNVSEKKLEGRSHIRVHYY 179


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +2

Query: 428 KALRRQLPVTRSKIDWARL-----VSYTIGKESRANDVSPLRYEPQRRS 559
           K LRR LP+ R KI+++ +     V+Y    E+   +V   RY PQ++S
Sbjct: 554 KQLRRTLPIKRIKIEFSHISEEFVVAYDKALEALRVEVFNSRY-PQQKS 601


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 66 SVQPRTPLAPHQVPPAKAQP 7
          +VQ ++PL P + PP KA P
Sbjct: 6  AVQSKSPLLPKENPPVKAFP 25


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = -3

Query: 206 DRQRPHRTPPTVPIVLGLKLVIFDTGDQLYRTRVDCATHH*TSTMLVV 63
           D+   +   P +  ++   +     G+ +YRT +   TH   +T L++
Sbjct: 149 DKMNNNIKKPNLEFLMPCTITKLSKGENIYRTHIHTTTHGELTTKLLI 196


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 88  WWVAQSTLVRYSWSP 132
           WWV     VR+ WSP
Sbjct: 413 WWVPYLEYVRFMWSP 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,520
Number of Sequences: 5004
Number of extensions: 60151
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)