Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223...    42   4e-04
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    30   2.3  
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067...    29   5.3  
09_02_0176 + 5376868-5377205,5377703-5378831                           28   7.1  
01_07_0346 + 42889121-42890406,42896115-42896118                       28   9.3  

>07_03_0068 -
           13021090-13021197,13021319-13021354,13022245-13022322,
           13022412-13022514,13022732-13022817,13023036-13023090,
           13023186-13023250,13023997-13024086,13024415-13024530,
           13024701-13024710
          Length = 248

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/54 (33%), Positives = 34/54 (62%)
 Frame = +2

Query: 347 VRLVSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYTIGKE 508
           V+L ++ +    T + ++Y  +SD TFK LRR+LPVTR+   W   ++ ++ ++
Sbjct: 186 VQLDTNIDCKDSTILQESYMNLSDATFKDLRRKLPVTRTLFPWHNTLALSLTRD 239



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = +3

Query: 12  EPWRAALDEELTAYVAAHYKHGASLVVGRTVDSGTVQLVAC-IEDHQFQP-----KNYWN 173
           E +R+ALD EL+ YV   Y  G  + V R       +L    + DH+F       ++  N
Sbjct: 91  EDFRSALDVELSKYVGEAYPKGILIEVSRKFWHSYEKLFHIQLLDHRFAHLQLCIESSSN 150

Query: 174 GRWRSVWSLTV--GGPATELRGTLRVQVH 254
           G WRS+W+L    G    E++G ++V  H
Sbjct: 151 GNWRSIWTLEFIDGLQLVEIKGKIQVGAH 179


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 228 VTLWQARRPSKTTPNATDRSNSSWVETGD 142
           VT+W+  RP+K TP    + N  +V T D
Sbjct: 538 VTVWETGRPTKATPPIEMQKNQRYVHTYD 566


>10_08_0586 +
           19005991-19006273,19006481-19006642,19006741-19006796,
           19006899-19007061,19007753-19007859,19008879-19008945,
           19009176-19009375
          Length = 345

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 216 QARRPSKTTPNATDRSNSSWVETGDLRYRRPA 121
           Q RRP+   P+ TD S+ S+    D RY+R A
Sbjct: 123 QQRRPASGRPSGTDGSDFSYRMVVDSRYQRVA 154


>09_02_0176 + 5376868-5377205,5377703-5378831
          Length = 488

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 356 VSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDW 475
           V D  NTY  A   N+ T+     K    QLP+   ++ W
Sbjct: 228 VVDGPNTYYNAFDGNFDTLVAALGKIGYGQLPIAIGEVGW 267


>01_07_0346 + 42889121-42890406,42896115-42896118
          Length = 429

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 216 QARRPSKTTPNATDRSNSSWVETGDLRYRRPAVP 115
           + RR S+ TP AT+ ++SS V     R  +P+VP
Sbjct: 181 ERRRNSRRTPRATEGASSSRVSPRHGREDQPSVP 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,301,039
Number of Sequences: 37544
Number of extensions: 413526
Number of successful extensions: 1045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)