Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00875
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12) 35 0.063
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 29 3.1
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 4.1
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 29 5.5
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 5.5
SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_40687| Best HMM Match : PADR1 (HMM E-Value=0.23) 28 7.2
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0) 28 7.2
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 9.5
>SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12)
Length = 225
Score = 35.1 bits (77), Expect = 0.063
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 87 VVGRTVDSGTVQLVACIEDHQFQPKNY 167
V G + D G + +VAC+EDH+F+P+N+
Sbjct: 103 VYGSSTD-GLITIVACLEDHKFEPQNF 128
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 129 RPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 4
RP + Y PP+ H V + P+ HQ PPA +QPL
Sbjct: 174 RPPIIYHQ----PPVIVHRPAVVYHQPPIIFHQPPPAVSQPL 211
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 240 VEFHVTLWQARRPSKTTPNATDRSNSSWVETGDLRYRR 127
+ FH+ ++ +T N + R+N W+ETGD ++ R
Sbjct: 1044 LSFHLLVFSVAEIVNSTVNGS-RANGIWIETGDRKFVR 1080
>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 755 AFYILHNTQTKHGLSVMNF 699
A ++LHNT TK L V+N+
Sbjct: 330 ALHVLHNTHTKRALQVLNY 348
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 156 VETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 4
V + RPA+ Y PP+ H + + P+ HQ PP QP+
Sbjct: 173 VHRAPIMLHRPAIIYHQ----PPVVVHRPAIIYHQPPIVFHQPPPVVNQPI 219
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 156 VETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 4
V + RP + Y PP+ H V + P+ HQ PPA QP+
Sbjct: 42 VHRAPILIHRPPIVYHQ----PPVVVHRPAVVYHQPPIVFHQPPPAVNQPM 88
>SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 213 ARRPSKTTPNATDRSNSSWVETGDLRYRRPAV-PYQSRLCDPPLN*HHACSVQPRTPLAP 37
A +P P+ D + WV R AV P + DP H + S+ P PLAP
Sbjct: 232 APKPVMQGPDINDDGSVWWVSHERESLRANAVLPLVLEMVDPDQRLHSSRSLAPAEPLAP 291
>SB_40687| Best HMM Match : PADR1 (HMM E-Value=0.23)
Length = 733
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 213 ARRPSKTTPNATDRSNSSWVETGDLRYRRPAV-PYQSRLCDPPLN*HHACSVQPRTPLAP 37
A +P P+ D + WV R AV P + DP H + S+ P PLAP
Sbjct: 128 APKPVMQGPDINDDGSVWWVSHERESLRANAVLPLVLEMVDPDQRLHSSRSLAPAEPLAP 187
>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
Length = 603
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/97 (23%), Positives = 39/97 (40%)
Frame = +2
Query: 131 LYRRSPVSTQELLERSVAFGVVFDGRRACHRVTWNSTCSSSYYEDGNVQLVSSKEIKAPL 310
+YR P+ ++ L S + C R+ + + +V + S +KAPL
Sbjct: 482 VYRAFPIPEKDSLLASPIILDLVILCEVCERIKFKVNDEEEFQNFNSVLSILSYLLKAPL 541
Query: 311 VASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDT 421
V SG F + EN ++ I +T S+T
Sbjct: 542 VPSGAPVVNALFKQRAC-IENIFRRLIKRRKRTSSET 577
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 142 SSIQATSCTVPESTVRPTTKLAP 74
S++ TS P STV PTT +AP
Sbjct: 183 STVVPTSTVEPTSTVEPTTMMAP 205
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 248 SSYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTF 427
SS+YEDG+ + + ++I+ P + E T +R D + T+ +S K DT +
Sbjct: 115 SSFYEDGHGRKFAWQKIRLPSSVTPEEYTV--ILRPKLDPDFTFSGNVSVRVKCNEDTDY 172
Query: 428 KALR-RQLPVTRSKI 469
+ +Q+ +T+ ++
Sbjct: 173 IFIHAKQMRLTKFEV 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,531,434
Number of Sequences: 59808
Number of extensions: 485172
Number of successful extensions: 1670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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