Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069084-1|AAL39229.1|  286|Drosophila melanogaster GH10050p pro...   134   2e-31
AE013599-3113|AAF46660.1|  286|Drosophila melanogaster CG10540-P...   134   2e-31
X55702-1|CAA39229.1|  390|Drosophila melanogaster polycomb prote...    30   3.0  
AY071619-1|AAL49241.1|  390|Drosophila melanogaster RE66837p pro...    30   3.0  
AE014296-3518|AAF51707.1|  390|Drosophila melanogaster CG32443-P...    30   3.0  

>AY069084-1|AAL39229.1|  286|Drosophila melanogaster GH10050p
           protein.
          Length = 286

 Score =  134 bits (323), Expect = 2e-31
 Identities = 60/85 (70%), Positives = 73/85 (85%)
 Frame = +2

Query: 254 YYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKA 433
           YYEDGNVQLVSSKE +  +V S E   AKE +RL+ DAEN YQ AIS+NY+TMSDTTFKA
Sbjct: 198 YYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTMSDTTFKA 257

Query: 434 LRRQLPVTRSKIDWARLVSYTIGKE 508
           +RRQLP+TR+KIDW+++VSY+IGKE
Sbjct: 258 MRRQLPITRTKIDWSKIVSYSIGKE 282



 Score =  113 bits (273), Expect = 2e-25
 Identities = 51/84 (60%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
 Frame = +3

Query: 9   AEPWRAALDEELTAYVAAHYKHGASLVVGRTVDSGTVQLVACIEDHQFQPKNYWNGRWRS 188
           AEPWRAALD E  AY A+HY+HG S V G+      + L  CIEDHQFQPKNYWNGRWRS
Sbjct: 115 AEPWRAALDLETLAYTASHYRHGVSSVFGKA-QGNQITLTICIEDHQFQPKNYWNGRWRS 173

Query: 189 VWSLT--VGGPATELRGTLRVQVH 254
            W +T   G    EL+G L+VQVH
Sbjct: 174 QWHVTFQAGSGTAELKGVLKVQVH 197


>AE013599-3113|AAF46660.1|  286|Drosophila melanogaster CG10540-PA
           protein.
          Length = 286

 Score =  134 bits (323), Expect = 2e-31
 Identities = 60/85 (70%), Positives = 73/85 (85%)
 Frame = +2

Query: 254 YYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKA 433
           YYEDGNVQLVSSKE +  +V S E   AKE +RL+ DAEN YQ AIS+NY+TMSDTTFKA
Sbjct: 198 YYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTMSDTTFKA 257

Query: 434 LRRQLPVTRSKIDWARLVSYTIGKE 508
           +RRQLP+TR+KIDW+++VSY+IGKE
Sbjct: 258 MRRQLPITRTKIDWSKIVSYSIGKE 282



 Score =  113 bits (273), Expect = 2e-25
 Identities = 51/84 (60%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
 Frame = +3

Query: 9   AEPWRAALDEELTAYVAAHYKHGASLVVGRTVDSGTVQLVACIEDHQFQPKNYWNGRWRS 188
           AEPWRAALD E  AY A+HY+HG S V G+      + L  CIEDHQFQPKNYWNGRWRS
Sbjct: 115 AEPWRAALDLETLAYTASHYRHGVSSVFGKA-QGNQITLTICIEDHQFQPKNYWNGRWRS 173

Query: 189 VWSLT--VGGPATELRGTLRVQVH 254
            W +T   G    EL+G L+VQVH
Sbjct: 174 QWHVTFQAGSGTAELKGVLKVQVH 197


>X55702-1|CAA39229.1|  390|Drosophila melanogaster polycomb protein
           protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = -2

Query: 216 QARRPSKTTPNATDRSNSSWVETG---------DLRYRRPAVPYQSRLCDPPLN*HHACS 64
           Q +   + TP AT+  N++  E+G         +   + P VP ++     P N      
Sbjct: 266 QLKSEQQATPLATEAINTTPAESGAEEEEVANEEGNQQAPQVPSENNNIPKPCNNLAINQ 325

Query: 63  VQPRTPLAPHQVPP 22
            QP TPL+P  +PP
Sbjct: 326 KQPLTPLSPRALPP 339


>AY071619-1|AAL49241.1|  390|Drosophila melanogaster RE66837p
           protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = -2

Query: 216 QARRPSKTTPNATDRSNSSWVETG---------DLRYRRPAVPYQSRLCDPPLN*HHACS 64
           Q +   + TP AT+  N++  E+G         +   + P VP ++     P N      
Sbjct: 266 QLKSEQQATPLATEAINTTPAESGAEEEEVANEEGNQQAPQVPSENNNIPKPCNNLAINQ 325

Query: 63  VQPRTPLAPHQVPP 22
            QP TPL+P  +PP
Sbjct: 326 KQPLTPLSPRALPP 339


>AE014296-3518|AAF51707.1|  390|Drosophila melanogaster CG32443-PA
           protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = -2

Query: 216 QARRPSKTTPNATDRSNSSWVETG---------DLRYRRPAVPYQSRLCDPPLN*HHACS 64
           Q +   + TP AT+  N++  E+G         +   + P VP ++     P N      
Sbjct: 266 QLKSEQQATPLATEAINTTPAESGAEEEEVANEEGNQQAPQVPSENNNIPKPCNNLAINQ 325

Query: 63  VQPRTPLAPHQVPP 22
            QP TPL+P  +PP
Sbjct: 326 KQPLTPLSPRALPP 339


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,875,008
Number of Sequences: 53049
Number of extensions: 704086
Number of successful extensions: 1755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)