Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00875
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein... 103 2e-22
Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein... 103 2e-22
U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein p... 103 2e-22
U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical p... 30 2.1
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 29 2.7
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 29 2.7
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 28 8.3
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 28 8.3
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 103 bits (246), Expect = 2e-22
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +2
Query: 194 VFDGRRACHRVTWNSTCSSSYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVRLVSDAE 370
V DG+ + YYEDGNVQL S KE + S + TAKE + +S+ E
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 371 NTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYTIGKESR 514
YQ A+ +NY MSDTTFKALRRQLPVTR+K+DW + +Y IG+E +
Sbjct: 235 TIYQNAVQENYANMSDTTFKALRRQLPVTRAKMDWNKAQTYRIGQEMK 282
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +3
Query: 12 EPWRAALDEELTAYVAAHY-KHGASLVVGRTVDSGTVQLVACIEDHQFQPKNYWNGRWRS 188
E WR AL +L Y+ HY K G +V R +G + CIE HQFQPKN+ NGRWRS
Sbjct: 115 EQWRQALQTQLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRS 169
Query: 189 VWSLTVG---GPATELRGTLRVQVH 254
W++ VG + E++G + QVH
Sbjct: 170 EWNVPVGDGKSGSQEMKGKILSQVH 194
>Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 103 bits (246), Expect = 2e-22
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +2
Query: 194 VFDGRRACHRVTWNSTCSSSYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVRLVSDAE 370
V DG+ + YYEDGNVQL S KE + S + TAKE + +S+ E
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 371 NTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYTIGKESR 514
YQ A+ +NY MSDTTFKALRRQLPVTR+K+DW + +Y IG+E +
Sbjct: 235 TIYQNAVQENYANMSDTTFKALRRQLPVTRAKMDWNKAQTYRIGQEMK 282
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +3
Query: 12 EPWRAALDEELTAYVAAHY-KHGASLVVGRTVDSGTVQLVACIEDHQFQPKNYWNGRWRS 188
E WR AL +L Y+ HY K G +V R +G + CIE HQFQPKN+ NGRWRS
Sbjct: 115 EQWRQALQTQLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRS 169
Query: 189 VWSLTVG---GPATELRGTLRVQVH 254
W++ VG + E++G + QVH
Sbjct: 170 EWNVPVGDGKSGSQEMKGKILSQVH 194
>U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein
protein 1 protein.
Length = 282
Score = 103 bits (246), Expect = 2e-22
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +2
Query: 194 VFDGRRACHRVTWNSTCSSSYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVRLVSDAE 370
V DG+ + YYEDGNVQL S KE + S + TAKE + +S+ E
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 371 NTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYTIGKESR 514
YQ A+ +NY MSDTTFKALRRQLPVTR+K+DW + +Y IG+E +
Sbjct: 235 TIYQNAVQENYANMSDTTFKALRRQLPVTRAKMDWNKAQTYRIGQEMK 282
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +3
Query: 12 EPWRAALDEELTAYVAAHY-KHGASLVVGRTVDSGTVQLVACIEDHQFQPKNYWNGRWRS 188
E WR AL +L Y+ HY K G +V R +G + CIE HQFQPKN+ NGRWRS
Sbjct: 115 EQWRQALQTQLDIYIDDHYAKSGTGVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRS 169
Query: 189 VWSLTVG---GPATELRGTLRVQVH 254
W++ VG + E++G + QVH
Sbjct: 170 EWNVPVGDGKSGSQEMKGKILSQVH 194
>U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical
protein C50E3.13 protein.
Length = 384
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 255 YELEHVEFHVTLWQARRPSKTTPNATDRSNSSWVETGDLRYRRPAVPYQSR 103
YE E + +W+ RR N TD+S ++W+ET + R R A ++ R
Sbjct: 175 YERERIARKTFIWRLRR----FKNPTDQSVNTWMETLNDRLNRVANSWERR 221
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 198 KTTPNATD-RSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPP 22
+TTP+ R S V GD Y P ++ + D P S P PL P Q PP
Sbjct: 196 RTTPDPRIIRPPESLVVIGD--YDEDEPPSENAVVDSPQP--FVTSPPPAQPLFPQQTPP 251
Query: 21 AKAQPL 4
A PL
Sbjct: 252 PPASPL 257
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 371 NTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYT--IGKESRANDVS 529
N Y A + N+KTMSDT + + + RS D A + T + + SR DVS
Sbjct: 683 NFYSLAFASNFKTMSDTATTSTTVVIHLKRSNHDDASASATTAQLQQRSRYCDVS 737
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 135 IEDHQFQPKNYWNGRWRSVWSLTVGGPATEL 227
+E H + K+ W + SVW++ G P+TE+
Sbjct: 1100 VEAHSSRLKSGWQNLF-SVWTIAAGDPSTEI 1129
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 135 IEDHQFQPKNYWNGRWRSVWSLTVGGPATEL 227
+E H + K+ W + SVW++ G P+TE+
Sbjct: 1100 VEAHSSRLKSGWQNLF-SVWTIAAGDPSTEI 1129
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -3
Query: 272 HYHPHNMNLNT*SST*LCGRPADR---QRPHRTPPTVPIVLGLKLVIFDTGDQLYRTRVD 102
HYHP+ M N S R DR Q P TP P +LV ++ +Q+ R R D
Sbjct: 127 HYHPYGMRSNGLS------RSPDRTPPQHPQYTPYGPPYNQPGQLVPPESWNQINRARSD 180
Query: 101 CATHH 87
A H+
Sbjct: 181 PAIHN 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,486
Number of Sequences: 27780
Number of extensions: 347428
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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