Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   4.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.4  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALR 439
           +++S   N Y+ +  +NY    +T +K L+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQ 109


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 689 NNHIINLSKYS*ENVHRGVTYHCLELI 609
           NN+I N+S Y+ +N +    Y+ +  I
Sbjct: 87  NNYISNISNYNNDNNYNKKLYYNINYI 113


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 689 NNHIINLSKYS*ENVHRGVTYHCLELI 609
           NN+I N+S Y+  N +    Y+ +  I
Sbjct: 87  NNYISNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 689 NNHIINLSKYS*ENVHRGVTYHCLELI 609
           NN+I N+S Y+  N +    Y+ +  I
Sbjct: 325 NNYISNISNYNNNNNYNKKLYYNINYI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,474
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)