Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00875
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05520.1 68416.m00605 F-actin capping protein alpha subunit f...    56   3e-08
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    30   1.5  
At4g17180.1 68417.m02584 glycosyl hydrolase family 17 protein si...    29   4.5  
At2g42370.1 68415.m05243 expressed protein                             29   4.5  
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila...    28   5.9  
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila...    28   5.9  
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ...    28   7.8  
At3g13040.2 68416.m01625 myb family transcription factor contain...    28   7.8  
At3g13040.1 68416.m01624 myb family transcription factor contain...    28   7.8  

>At3g05520.1 68416.m00605 F-actin capping protein alpha subunit
           family protein contains Pfam profile: PF01267 F-actin
           capping protein alpha subunit
          Length = 308

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/85 (29%), Positives = 44/85 (51%)
 Frame = +2

Query: 254 YYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKA 433
           Y+E+GNV+L + K+ +   +       A     ++   E  Y  ++   Y  + D TFK 
Sbjct: 215 YFEEGNVELDAKKDFQDSTIFQSADDCAIAIANIIRHHETEYLASLEVAYSKLPDNTFKD 274

Query: 434 LRRQLPVTRSKIDWARLVSYTIGKE 508
           LRR+LPVTR+   W   + +++ +E
Sbjct: 275 LRRKLPVTRTLFPWQNTLQFSLTRE 299



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
 Frame = +3

Query: 12  EPWRAALDEELTAYVAAHYKHGASLV---VGRTVDS--GTVQLVACIEDHQFQPKNYWNG 176
           E +R ALD E+  YV+  Y  G S V    G+  +      +LV  I   +  P+N+ NG
Sbjct: 127 EEYRYALDAEIQRYVSESYPKGMSAVNCVKGKDNEGPGSDFELVVIITAMRLSPQNFCNG 186

Query: 177 RWRSVWSLTV--GGPATELRGTLRVQVH 254
            WRSVW++         +++G L+V  H
Sbjct: 187 SWRSVWNIDFQDESQVLDIKGKLQVGAH 214


>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +2

Query: 293 EIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRSKID 472
           E    L +S +  +   FV++ S    T Q++ S + K   D T KA        + K  
Sbjct: 53  EAHTELFSSLKSVSKSPFVQIRSMETKTKQSSGSSSNKLFYDITLKATESLSAKYQPKC- 111

Query: 473 WARLVSYTIGKESRANDVSPL 535
              L++ T+ K  R ND++PL
Sbjct: 112 -GDLIALTMDKPRRINDLNPL 131


>At4g17180.1 68417.m02584 glycosyl hydrolase family 17 protein
           similar to 3-glucanase GI:18483232 from [Sorghum
           bicolor]
          Length = 475

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 356 VSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDW 475
           V D  NTY  A   N+ T+     K    Q+P+   +I W
Sbjct: 222 VPDGPNTYYNAFDGNFDTLVAALTKLGYGQMPIVIGEIGW 261


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/83 (22%), Positives = 37/83 (44%)
 Frame = +2

Query: 269 NVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKALRRQL 448
           +++L + KE    L    E   + E + +V D  + +     D+   M D   + ++   
Sbjct: 194 SLKLPNKKERVVILDEDKEFLESDESISVVEDVISNWMLLHCDDAWMMPDEVVEWMKGIK 253

Query: 449 PVTRSKIDWARLVSYTIGKESRA 517
                K+DWA L+ + + KE +A
Sbjct: 254 KKQLDKLDWAGLMWFMVEKELKA 276


>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 308 LVASGEVATAKEF-VRLVSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRS 463
           L  S ++A+ KE  +RL +D +NT +    D   T S+   + L+  LP+  S
Sbjct: 116 LSLSMKIASEKEMKIRLQADFDNTRKKLDKDRLSTESNAKVQILKSLLPIIDS 168


>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 308 LVASGEVATAKEF-VRLVSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRS 463
           L  S ++A+ KE  +RL +D +NT +    D   T S+   + L+  LP+  S
Sbjct: 116 LSLSMKIASEKEMKIRLQADFDNTRKKLDKDRLSTESNAKVQILKSLLPIIDS 168


>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
           similar to homeobox transcription factor Hox7
           [Lycopersicon peruvianum] GI:19486;  contains Pfam
           PF00046: Homeobox domain
          Length = 476

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 350 RLVSDAENTYQTAISDNYKTMSDTTFKALRRQLPVTRSKIDWARLVSYTIGKES 511
           RL S + + Y +     +K+  +T FK   R++PVT SK  W    S+  G  +
Sbjct: 283 RLKSPSTSFYNSV--PRHKSFKET-FKGSPREIPVTNSKKGWISSKSWAEGSRN 333


>At3g13040.2 68416.m01625 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 449

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 654 RKCSQGCNISLSRAHNFLN 598
           +K  Q C+ SLS  HNFLN
Sbjct: 22  KKLGQACSSSLSPVHNFLN 40


>At3g13040.1 68416.m01624 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 449

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 654 RKCSQGCNISLSRAHNFLN 598
           +K  Q C+ SLS  HNFLN
Sbjct: 22  KKLGQACSSSLSPVHNFLN 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,256
Number of Sequences: 28952
Number of extensions: 319364
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)