Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00873
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        40   2e-05
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   1.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.6  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +2

Query: 23  IVARRLQISHSCVSKVCKRFQETGS 97
           +++R+L++SH CVSK+  R+QETGS
Sbjct: 75  VISRQLRVSHGCVSKILNRYQETGS 99


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 483 ALRKSLPRPPVDPTSSVATMQ 421
           +LRKS+P  P D  S + T++
Sbjct: 118 SLRKSIPTMPSDKLSKIQTLK 138


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 568 KTSSVLPSKEMPAHIIQEPTHK 503
           K++S+   KE+   I  EP HK
Sbjct: 207 KSASIPKKKEVKEEIEDEPDHK 228


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 392 SSSPTRAGCVCMVATEEVGSTGGLGSDL 475
           +S+PT +    M +   V +T   GSDL
Sbjct: 91  TSNPTYSSRSVMTSCSSVPTTASYGSDL 118


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 523 IQEPTHKPLFQRNSTAQIAPQAACRP 446
           I + THK LFQ    A++ P     P
Sbjct: 214 ICQATHKQLFQLVQWAKLVPHFTSLP 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,117
Number of Sequences: 336
Number of extensions: 4000
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)