Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00873
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    29   0.89 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   3.6  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    26   4.7  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   6.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.3  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 546 RRKCRPTSYKSRPISHCFSETALRKSLPRPPVDPTSSVATMQTHP 412
           RR+ RP  Y  +PI    SE  +++   RPP   +SS +T    P
Sbjct: 101 RRRGRPRKYPPKPIDE-GSEPIIKRKRGRPPKIKSSSPSTKLDDP 144


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 571 TKTSSVLPSKEMPAHIIQEPTHKPLFQRNSTAQI 470
           TK++S  PS  +PA     P H+  + +N+ A++
Sbjct: 121 TKSTSQPPSNHLPAFQQIPPIHQSAYPQNNVAEV 154


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 159 IKRSF-LSDVPRRRPDLGLGIKLPVS*KRLQTFE-TQEWLIWSR 34
           +K SF L+  P RR ++G G+K P+  K+L   E T   L W +
Sbjct: 83  LKESFTLTRGPNRRGNVGKGVKRPMVNKKLGQLELTSLDLRWQK 126


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 540 KCRPTSYKSRPISHCFSETALRKSLPRPPVDPTS 439
           K +  + +++ +++ FS+  L   L  PP  PTS
Sbjct: 69  KAKTVADRTKDVAYSFSDPILSTQLRTPPPQPTS 102


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 635 VPAQYWKCTRPKLTAPSSPARHENKL 558
           + +QYW+C RPK    +    H ++L
Sbjct: 410 IQSQYWRCMRPKHFDANPKDAHVDRL 435


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 646 GNDMFQHNIGNXXXXXXXXXXXXPGTKTSS---VLPSKEMPAHIIQEPTH 506
           GND+ +H+  N                +SS   V P K + A+I Q PTH
Sbjct: 161 GNDLMKHDDTNNHQIPPPKPNFSSKAGSSSPISVSPLKNVKAYISQSPTH 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,753
Number of Sequences: 5004
Number of extensions: 66988
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)