Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00873
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0146 + 26969011-26969995,26970878-26970930 31 0.93
10_05_0106 - 9220354-9220812,9220975-9221124 31 1.2
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 29 3.7
09_04_0334 + 16779883-16780150,16780618-16781828 29 3.7
11_06_0182 + 20997071-20997832,20998010-20998150 29 4.9
05_02_0156 + 7163756-7163834,7165447-7166225 29 4.9
10_01_0354 - 3887790-3890204 28 6.5
03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480 28 6.5
07_01_1147 + 10771305-10771619,10771991-10772077 28 8.6
03_05_0145 + 21254448-21255488 28 8.6
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 8.6
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 401 PTRAGCVCMVATEEVGSTGGLGSDLRSAVSLKQWLMGRLLYDVGRHFLRR 550
P +A T V S GG G V K+WL+G + V R LRR
Sbjct: 208 PEKAAPAATTTTAAVASVGGGGGGGGGGVGSKRWLLGGVPEKVRRSELRR 257
>10_05_0106 - 9220354-9220812,9220975-9221124
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 365 IERLSNGGKSSSPTRAGCVCMVATEEVGSTG--GLGSDLRSAVSLKQW 502
++ + G +SP+R C V E G G G GS LR A++ W
Sbjct: 136 VDGIGGDGIWASPSRGAVACCVIEERSGRLGATGEGSALREAINSMAW 183
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 377 SNGGKSSSPTRAGCVCMVATEEVGSTGGLGS-DLRS 481
SN G + TRAG T G GGLGS DL S
Sbjct: 330 SNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSS 365
>09_04_0334 + 16779883-16780150,16780618-16781828
Length = 492
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 500 WLMGRLLYDVGRHFLRR*NRACFRAWRGTRGRS 598
W G LL+ +G H L + AWR TR RS
Sbjct: 35 WAPGGLLHSIGGHRLLNQKASGCTAWRDTRRRS 67
>11_06_0182 + 20997071-20997832,20998010-20998150
Length = 300
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 443 PLRSLPCKHILLSSENWICLHCSTSQLRLV 354
PL+ LP +HI++S WI S+L LV
Sbjct: 27 PLQDLPNRHIIVSCYGWIVNADERSELHLV 56
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 603 EVDRPLVPRQARKQARFYRRRKCRPTSYKSRP 508
+ D PL PR R++A R R+ RP ++ P
Sbjct: 90 QADAPLHPRHRRRRAAPPRPRRLRPVGHRKAP 121
>10_01_0354 - 3887790-3890204
Length = 804
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -3
Query: 402 GELDLPPLLNLSIKIGTSKLKACLS------MSYREFRACDRPFWSQIRLLESS 259
G+ D+ P+L LS + LK CLS + +R C FW LL S+
Sbjct: 406 GDRDIMPVLKLSYNALPAALKPCLSYLSIFPKDFEYYRRCIIMFWMAHGLLNSN 459
>03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480
Length = 221
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 448 PNLFGRYHANTSCSRRRTGFAS 383
PNLF H + SCS R TGF +
Sbjct: 33 PNLFPATHPSLSCSPRFTGFTT 54
>07_01_1147 + 10771305-10771619,10771991-10772077
Length = 133
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 575 WRGTRGRSTSDGYISNIVLEHVVPYAGYAGDSFLLKHDNARCHT 706
W GR+T+ + EHV P G+A + HD AR T
Sbjct: 87 WATATGRATTPSNLGEET-EHVEPMCGFAPQANSFFHDAARVST 129
>03_05_0145 + 21254448-21255488
Length = 346
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 531 PTSYKSRPISHCFSETALRKSLPRPPVDPTSSV 433
P + + SETA+ S PRPP +P V
Sbjct: 38 PVVVEEEEVKEVLSETAVPVSRPRPPPEPEKEV 70
>01_05_0309 -
20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +1
Query: 151 PFYR--VNL-SPKSALTWCRRPTGAPRCS*GSS 240
PF+R ++L +P SA++WCRR G + GSS
Sbjct: 78 PFFRQAIDLRAPVSAVSWCRRGGGELAAAAGSS 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,490,650
Number of Sequences: 37544
Number of extensions: 497251
Number of successful extensions: 1533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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