Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00873
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         40   0.002
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.019
SB_5629| Best HMM Match : PAX (HMM E-Value=0)                          37   0.019
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.077
SB_18180| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_30705| Best HMM Match : C2 (HMM E-Value=3.7e-07)                    29   2.9  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3670| Best HMM Match : C2 (HMM E-Value=3.7e-07)                     29   2.9  
SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)                    29   3.8  
SB_35312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)             29   5.0  
SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)                28   6.7  
SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_21987| Best HMM Match : Sulfotransfer_2 (HMM E-Value=4.5e-38)       28   8.8  
SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)                 28   8.8  
SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)                     28   8.8  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   28   8.8  
SB_7951| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/72 (30%), Positives = 40/72 (55%)
 Frame = +1

Query: 307 PKLTVAHRQARLQFARTNLN*EVEQWRQIQFSDESRMCLHGSDRRGWVYRRPGERFAQCC 486
           P LT  H+++RLQFA +++      W+++ +SDE++M L G + + +V+R+         
Sbjct: 120 PLLTENHKKSRLQFATSHVGDTANMWKKVLWSDETKMELFGQNAKRYVWRKTNTAHHSEH 179

Query: 487 FAETVAYGSALV 522
              TV YG   +
Sbjct: 180 TIPTVKYGGGSI 191


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +2

Query: 26  VARRLQISHSCVSKVCKRFQETGS 97
           ++RRL++SH CVSK+  RFQ+TGS
Sbjct: 46  ISRRLRVSHGCVSKILYRFQQTGS 69



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 26  VARRLQISHSCVSKVCKRFQETGS 97
           ++RRL++SH CVSK+  +F ETGS
Sbjct: 316 ISRRLRVSHGCVSKILNKFHETGS 339


>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 26  VARRLQISHSCVSKVCKRFQETGS 97
           ++RRL++SH CVSK+  +F ETGS
Sbjct: 358 ISRRLRVSHGCVSKILNKFHETGS 381


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 26  VARRLQISHSCVSKVCKRFQETGS 97
           ++R+L++SH CVSK+  RF ETGS
Sbjct: 147 ISRQLRVSHGCVSKILCRFYETGS 170


>SB_5629| Best HMM Match : PAX (HMM E-Value=0)
          Length = 383

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 13/24 (54%), Positives = 21/24 (87%)
 Frame = +2

Query: 26  VARRLQISHSCVSKVCKRFQETGS 97
           ++RRL+I+H C+SK+  +FQ+TGS
Sbjct: 91  ISRRLKITHGCISKLLAKFQKTGS 114


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 26 VARRLQISHSCVSKVCKRFQETGS 97
          ++R+L +SH CVSK+  R+ ETGS
Sbjct: 18 ISRQLLVSHGCVSKILGRYYETGS 41


>SB_18180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 492 SETALRKSLPRPPVDPTSSVATMQTHPALVGELDLPP 382
           S+ ALR  LPRP   P +S  T+ T P + G  +  P
Sbjct: 269 SDRALRNDLPRPEKYPENSPGTL-TDPVITGSFEKRP 304


>SB_30705| Best HMM Match : C2 (HMM E-Value=3.7e-07)
          Length = 278

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 368 ERLSNGGKSSSPTRAGCVCMVATEEVGST-GGLGSDLRSAVSLKQWLMGRLLYDVGR 535
           ER+ N  +  S T  G +   +T   G   GG G +  + +  K W++     DVGR
Sbjct: 107 ERVENASEVHSDTEVGSIRSASTARAGGVRGGEGGE-EALLPGKAWIVAEYYPDVGR 162


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 145 PLRCAPAPSRSWSRDKATSLL 83
           PLRC+PAP  ++S  + T+LL
Sbjct: 341 PLRCSPAPQPTYSEPRKTNLL 361


>SB_3670| Best HMM Match : C2 (HMM E-Value=3.7e-07)
          Length = 188

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 368 ERLSNGGKSSSPTRAGCVCMVATEEVGST-GGLGSDLRSAVSLKQWLMGRLLYDVGR 535
           ER+ N  +  S T  G +   +T   G   GG G +  + +  K W++     DVGR
Sbjct: 17  ERVENASEVHSDTEVGSIRSASTARAGGVRGGEGGE-EALLPGKAWIVAEYYPDVGR 72


>SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 520 QEPTHKPLFQRNSTAQIAPQAACRPNLFGRYHANTSCSRRRTGFASIAQPLN 365
           Q   H  +  RN  A+ + ++A R  L G+   N + + +RTGFA   + +N
Sbjct: 162 QMDEHLEVISRNKLAKPSVKSAKRDLLTGQATPNKNSADKRTGFARAVELVN 213


>SB_35312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 453 VDPTSSVATMQTHPALVGELDLPPLLNLSIKIGTSKLKACLSMSYREFRACD 298
           V+  ++  +M   PA   ++  P LLN   +      K  LS  + + RACD
Sbjct: 33  VETHTANVSMPEQPASFSQISYPHLLNPPTEAPCEVKKMVLSSDWEKLRACD 84


>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
          Length = 1130

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +2

Query: 356  PILIERLSNGGKSSSPTRA-GC----VCMVATEEVG--STGGLGSDLRSAVSLKQWLMGR 514
            P L    S+GG+     +   C    +C+V T   G  + GG+G  LR   S ++   GR
Sbjct: 915  PALPSIASSGGEGGESVKERACDTLIMCIVTTLNQGLRNGGGIGDVLRRRSSKEKMFAGR 974

Query: 515  LLYDVGRHFL 544
            ++YD+   F+
Sbjct: 975  VVYDLMFFFI 984


>SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)
          Length = 319

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 571 TKTSSVLPSKEMPAHIIQEPTHKPLFQRNSTAQIAPQAACR 449
           T T+ ++P K  P H +Q     P   R +TA I+P   C+
Sbjct: 62  TNTAHIIPYKHCPHHPVQT---LPTSARTNTAHISPYKHCQ 99


>SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 375 NLSIKIGTSKLKACLSMSYREFRACDRPFWSQIRLLESSTT 253
           +LS+ I    L     M  R    C+RP W  + LL  + T
Sbjct: 357 SLSLTISERALNILRRMPLRRLTTCNRPHWRHLSLLHYNPT 397


>SB_21987| Best HMM Match : Sulfotransfer_2 (HMM E-Value=4.5e-38)
          Length = 580

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 645 GTTCSSTILEMYPSEVDRPLV--PRQARKQARFYRRRKCRPTSYKSRPISHCFSETALRK 472
           GT C ST +E + +    PLV  P   R  AR   R      +Y+ R +S     +A+RK
Sbjct: 80  GTECRSTHVECFTNNCRVPLVRMPNVVRMYARRVVRMNAECHTYECR-VSSVRMPSAVRK 138

Query: 471 S 469
           S
Sbjct: 139 S 139


>SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)
          Length = 481

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 353 VPILIERLSNGGKSSSPTRAGCVCMVATEEVGSTG 457
           V +   +LS G  S+SP     +CM+A E++   G
Sbjct: 432 VRVFTRQLSQGKLSNSPRSTTKLCMMANEDIDEVG 466


>SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)
          Length = 241

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 129 GAHRRGMTVLSC*PLSEIGINLVSTSNRSSEMFVG*QLASRQSSTTQASESDSKKACHRP 308
           G  RRG+T+ S   L  + +NL +    S+++        + S++ Q     +K+A H P
Sbjct: 37  GFSRRGVTLASLRLLPRVDVNLKACHFFSNQVVASQMEVPQGSTSAQHLAEPNKQAAHEP 96


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 665 HRHIPH-RERHVPAQYWKCTRPKLTAPSSPARH 570
           H H P     H P+++  C RP+L+    P+RH
Sbjct: 233 HCHRPRLSNHHRPSRHHHCHRPRLSNHHRPSRH 265


>SB_7951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 531 PTSYKSRPISHCFSETALRKSLPRPPVDPTSSVATMQTHPALVGELDLPPLLNLSIK 361
           P+S  S  + +     A+ K  PRPPV P  +  + Q    ++  +  P L N +I+
Sbjct: 13  PSSACSNRLWNTSGAVAITKRHPRPPVPPPGAAESCQETTLVILYMPEPILRNYTIE 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,264,227
Number of Sequences: 59808
Number of extensions: 556022
Number of successful extensions: 2151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)