Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00873
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  RIVARRLQISHSCVSKVCKR 79
           R +A +L +SH+C+    K+
Sbjct: 87  REIAEKLHVSHTCIENHLKQ 106


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 668 SFLLKHDNARCHTA 709
           S +  HDNAR HT+
Sbjct: 117 SVVFHHDNARPHTS 130


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 722  QLFHGQCDNERYRA*EGSYHRHIPHRERHVP 630
            +L     ++E YR    S  R +P R   VP
Sbjct: 1343 RLAQDSSEDESYRGPSASGGRPVPERPERVP 1373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,033
Number of Sequences: 438
Number of extensions: 4612
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)