Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00872
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    69   5e-13
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    49   6e-07
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    42   9e-05
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    33   0.041
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   2.7  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    26   4.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   4.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   6.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   8.1  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   8.2  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   8.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = +3

Query: 291 ISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEM 470
           I IH   V L+A+ K     + ++ FL ++ D F DYF +  E  I++N+V+VYELLDE+
Sbjct: 58  IYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117

Query: 471 LDNGFPLATESNI 509
           +D GFP  TE+ I
Sbjct: 118 MDFGFPQTTETKI 130


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 26/81 (32%), Positives = 40/81 (49%)
 Frame = +3

Query: 258 PPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKEN 437
           P V      Y+ + H   + +VA+ K     + V+EFL  ++     YF    E  +K+N
Sbjct: 45  PIVSIGSSTYIYTKHED-LYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDN 103

Query: 438 YVVVYELLDEMLDNGFPLATE 500
              ++ELLDEM+D G    TE
Sbjct: 104 VSFIFELLDEMIDYGIIQTTE 124



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 625 KVSVKYANNEAYFDVVEEVDAIIDKSG 705
           +  +KY  N  Y D+VE ++ +I  +G
Sbjct: 170 RAGIKYRKNSIYIDIVERMNLLISSTG 196



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 130 MIHSLFIINPSGDVFLEKHWRSVIPRSVCDYY 225
           MI  LFI N  GD  + K +R  + +SV + +
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTEIF 32


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +3

Query: 339 EVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESN 506
           +  PL++ + + R+VD  + +F     + +++N  V+ +LL EM+D G+    E N
Sbjct: 76  DTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYATCMEPN 131


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 297 IHRGGVALVAVC--KQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEM 470
           ++R   +L  VC  +Q+   L ++E +H+ V+    YF +  E  +  N+   Y +++E+
Sbjct: 59  VYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEEL 118

Query: 471 L 473
           L
Sbjct: 119 L 119


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 378 VVDTFQDYFSDCTETII 428
           +VDTF+DY  DC E ++
Sbjct: 562 IVDTFRDYIVDCIEHMV 578


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 124 RQILSSIFSSQFKCFNLAT 68
           R+IL SI+  +FKC N +T
Sbjct: 9   REILESIYPEEFKCINDST 27


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDN 479
           +F  E LH + D+ +  +       +  +Y +VY+LLD ++ +
Sbjct: 22  IFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLDRVISH 64


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 606 SCPDGSVEDTFDFPVTVLAIVLKIFGGLI 520
           SCP G+V D   F      +  KI  GLI
Sbjct: 511 SCPSGNVNDLMRFETEKARVEAKIVEGLI 539


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 21.8 bits (44), Expect(2) = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 48  HLVKFTFGDWHRD 10
           H+V+FT G+ +RD
Sbjct: 822 HVVRFTLGELNRD 834



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 201 DHTSPMLL*KHVARW 157
           DHTS  LL  HV R+
Sbjct: 812 DHTSESLLYNHVVRF 826


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 381 VDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGF 485
           +D    Y   CTE+    + VV+Y +L+    NGF
Sbjct: 311 IDRITRYAEVCTESPSGVSQVVLYAILNRWGQNGF 345


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 103 KLNLESVENMIHSLFIINPSGDVFLEKHWRSVIPRS 210
           K  L+S+ +   SLFI NP G +     WR  I  S
Sbjct: 21  KTRLKSLYSDFTSLFIKNPEGFLANVNTWREAIETS 56


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 530 PNILRTIANTVTGKSNVSSTLPSGQLSNVPWRR 628
           P++LR   N     S +S  + S ++SN  W R
Sbjct: 66  PSVLRQGKNAFLKPSQLSFNMNSSEISNTHWAR 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,440
Number of Sequences: 5004
Number of extensions: 61448
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)