Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00872
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 84 1e-16
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 71 1e-12
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 70 2e-12
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 61 1e-09
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 42 4e-04
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 35 0.074
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 33 0.30
04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822 32 0.52
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 30 1.6
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 28 6.4
06_03_1296 - 29104857-29105870 28 6.4
06_01_1183 + 10157813-10159909 28 8.5
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057... 28 8.5
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 83.8 bits (198), Expect = 1e-16
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 18/102 (17%)
Frame = +3
Query: 264 VLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIE------------------FLHRVVDT 389
V+ +P HYL ++R GV +A + E+ PL IE FL RV D
Sbjct: 48 VVVSPTHYLFQVYRNGVTFLACTQVEMPPLLAIEVLTFALFYGSVNMICDFQFLSRVADV 107
Query: 390 FQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESNI*K 515
DY D E IIK+N+V+VY++LDEM+DNGFPL TE NI K
Sbjct: 108 LTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILK 149
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 634 VKYANNEAYFDVVEEVDAIIDKSGATV 714
VK A+NE Y ++VEE+DA +++ GA V
Sbjct: 180 VKDASNEVYVNIVEELDACVNREGALV 206
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +3
Query: 297 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 476
I V L+ +Q ++ FLHRVVD F+ YF + E +++N+VVVYELLDEM+D
Sbjct: 64 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 123
Query: 477 NGFPLATESNI 509
G+P TE+ I
Sbjct: 124 FGYPQYTEAKI 134
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 634 VKYANNEAYFDVVEEVDAIIDKSGATV 714
++Y NE + DVVE V+ +++ +G V
Sbjct: 167 IRYKKNEVFLDVVESVNILVNSNGQIV 193
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +3
Query: 297 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 476
I V L+ +Q ++ FLHRVVD F+ YF + E +++N+VVVYELLDEM+D
Sbjct: 65 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 124
Query: 477 NGFPLATESNI 509
G+P TE+ I
Sbjct: 125 FGYPQYTEAMI 135
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/110 (30%), Positives = 56/110 (50%)
Frame = +3
Query: 258 PPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKEN 437
PPV I + G+ V V+P ++E L R+ +DY E +++N
Sbjct: 48 PPVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKN 107
Query: 438 YVVVYELLDEMLDNGFPLATESNI*KN*LNHQIF*EQLPILLQENQMYPL 587
+++VYELLDE++D G+P T + + L IF E PI++ ++ PL
Sbjct: 108 FILVYELLDEVIDFGYPQTTSTEV----LKSYIFNE--PIMVDAGRLPPL 151
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 312 VALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDC-TETIIKENYVVVYELLDEMLDNGFP 488
V +V V +F+ V F+ YF E I+ N+V++YELLDE++D G+P
Sbjct: 66 VYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 KLNLESVENMIHSLFIINPSGDVFLEKHWR-SVIPRSVCDYYLEAQRASPNE 255
K LE VE++I ++ ++N D +L WR I +V +YL+ R PN+
Sbjct: 230 KRELEKVEDLIAAMLLLNQEAD-YLASAWRFKTIGPTVPSFYLDDDRLQPNK 280
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNG 482
L ++EF+H +V+T +F + E I + V+ +L+EM+ NG
Sbjct: 79 LAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122
>04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822
Length = 270
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 NLESVENMIHSLFIINPSGDVFLEKHWR-SVIPRSVCDYYLEAQRASPNE 255
++++VE++I ++ ++N D +L WR + +V +YL+ R PN+
Sbjct: 6 SMKNVEDLIDAMLLLNQEAD-YLASAWRFKTVGPTVPSFYLDDDRLQPNK 54
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNG 482
L V+E +H V+ YF E + N+ Y +LDE+L G
Sbjct: 189 LEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 198 DPSFSM*LLFGSTESIT**VPPVLAAPHHYLISIHRGGVA 317
DP+ + L + S + P +LA+PHH+L+S RG A
Sbjct: 2 DPAAPLLALSKAISSSSRSKPSLLASPHHFLLSRGRGSGA 41
>06_03_1296 - 29104857-29105870
Length = 337
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 687 CIDFFNYIKVSFIVSILYTDLLQGTFDSCPDGSVEDT 577
C+DF I +SF + TD++ T SCPD S +D+
Sbjct: 171 CVDFHGQI-LSFSI----TDMIWRTVSSCPDWSKQDS 202
>06_01_1183 + 10157813-10159909
Length = 698
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 651 IVSILYTDLLQGTFDSCPDGSVEDTFDFPVTVLAIVLKIFGGLINSFKYYFPW 493
IV++ + +L F D V PV+V A+ L FG ++NS W
Sbjct: 151 IVAVEFDTMLNDEFGDPSDNHVGLDLGLPVSVNAVDLAAFGVVLNSGNLTTAW 203
>02_03_0192 -
16204575-16204582,16204798-16204966,16205708-16205785,
16206442-16206567,16206723-16206968,16207368-16207487,
16207947-16208198,16208441-16208517,16208581-16208680,
16210071-16210511
Length = 538
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 504 YFPWPVGSHYLTFHPIIHTPPHNFL*LLSQCNLKSSPEK 388
YF WP HY H I ++ + L SPE+
Sbjct: 401 YFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLAKSPEE 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,256,901
Number of Sequences: 37544
Number of extensions: 372618
Number of successful extensions: 946
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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