Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00872
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     71   1e-12
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         63   2e-10
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_1547| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.014
SB_7873| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_54571| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.7  
SB_37067| Best HMM Match : Mgm101p (HMM E-Value=2.94273e-44)           28   8.7  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 37/91 (40%), Positives = 48/91 (52%)
 Frame = +3

Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
           PV          I +G V + AV +Q V    V EFL R VD    YF   TE  IK N+
Sbjct: 46  PVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNF 105

Query: 441 VVVYELLDEMLDNGFPLATESNI*KN*LNHQ 533
           V++YELLDE+ D G+P  T++ I K  +  Q
Sbjct: 106 VLIYELLDEIADYGYPQKTDTAILKTFITQQ 136


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +3

Query: 318 LVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLAT 497
           +V   K+      +  FLHR+V  F DYF +  E  I++N+V++YEL+DE++D G+P  T
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 498 ESNI 509
           E+ I
Sbjct: 72  ETKI 75



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 631 SVKYANNEAYFDVVEEVDAIIDKSG 705
           ++KY  NE + DV+E V+ ++  SG
Sbjct: 107 NIKYRKNEVFLDVIESVNLMVSSSG 131


>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
 Frame = +3

Query: 255 VPPVLAAPHHYLISIHRGGVALVAVCKQEV-----------APLFVIEFLHRVVDTF--- 392
           VPPV++ PH+YLISI+R  +  V V + E             PL   +   R    F   
Sbjct: 48  VPPVISTPHYYLISIYRNHLFFVGVVQSEAWQNGYQICFSGEPLSERDLYRRHNGNFFSV 107

Query: 393 -QDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATESNI*K 515
             +  +D      K+  V + +LL+EMLDNGFPLATE N+ K
Sbjct: 108 VTEVGTDLRRACNKKGAVYILQLLEEMLDNGFPLATEPNVLK 149



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166 DVFLEKHWRSVIPRSVCDYYLEAQ-RASPNE 255
           D+F+EKHW+SVI RS+CD++ EAQ +AS  E
Sbjct: 16  DIFVEKHWKSVINRSICDHFFEAQSKASSPE 46



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 509 LKELIKPPNILRTIANTVTGKS 574
           LKELI+PP+I+R + NTVTG S
Sbjct: 148 LKELIRPPSIVRQVVNTVTGSS 169


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +3

Query: 327 VCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLATES 503
           + KQ +   F+   +H V +  +DY     E  IK N  ++YELLDE+LD G+  AT +
Sbjct: 3   IYKQAIITFFLC--VHWVCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATST 59


>SB_1547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 456 LLDEMLDNGFPLATESNI*K 515
           LL+EMLDNGFPLATE N+ K
Sbjct: 29  LLEEMLDNGFPLATEPNVLK 48



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 509 LKELIKPPNILRTIANTVTGKS 574
           LKELI+PP+I+R + NTVTG S
Sbjct: 47  LKELIRPPSIVRQVVNTVTGSS 68


>SB_7873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 658 YFDVVEEVDAIIDKSGAT 711
           YFDV+EE+D IID+ G +
Sbjct: 2   YFDVIEEIDCIIDRHGGS 19


>SB_54571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 196 VIPRSVCDYYLEAQRASPNEYHRCWLLHIITSY-QFIEEELHLLLSV 333
           +IP   C Y  +  R   N +H  WL     +Y + + + L LL +V
Sbjct: 2   LIPMKPCGYDTQVLRVQSNLFHSMWLRSWRQNYVKIVRQTLRLLTNV 48


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 160  SGDVFLEKH-WRSVIPRSVCDYYLEAQRAS 246
            S + F + H W SV+ RS C+++   QRA+
Sbjct: 1437 SANDFADDHLWVSVVARSPCNFFSRVQRAT 1466


>SB_37067| Best HMM Match : Mgm101p (HMM E-Value=2.94273e-44)
          Length = 319

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 196 VIPRSVCDYYLEAQRASPNEYHRCWLLHIITSY-QFIEEELHLLLSV 333
           +IP   C Y  +  R   N +H  WL     +Y + + + L LL +V
Sbjct: 218 LIPMKPCGYDTQVLRVQSNLFHSMWLRSWRQNYVKIVRQTLRLLTNV 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,239,708
Number of Sequences: 59808
Number of extensions: 430787
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)