Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00872
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 115 3e-26
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 78 7e-15
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 78 7e-15
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 72 4e-13
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 72 4e-13
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 70 2e-12
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 65 4e-11
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 33 0.27
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 31 0.62
Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuo... 30 1.9
AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuo... 30 1.9
AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuo... 30 1.9
AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuo... 30 1.9
AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuro... 30 1.9
AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuo... 30 1.9
U50312-4|AAA92321.1| 542|Caenorhabditis elegans Temporarily ass... 28 5.8
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 115 bits (277), Expect = 3e-26
Identities = 50/85 (58%), Positives = 66/85 (77%)
Frame = +3
Query: 255 VPPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKE 434
VPP+++ PHHYLI++++ + LVAV E PL VIEFLHRV+ TF YF + +++ +KE
Sbjct: 45 VPPIISTPHHYLINVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKE 104
Query: 435 NYVVVYELLDEMLDNGFPLATESNI 509
N V+V+ELLDEMLDNGFPL TE NI
Sbjct: 105 NCVMVFELLDEMLDNGFPLVTEMNI 129
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +2
Query: 509 LKELIKPPNILRTIANTVTGKSNVSSTLPSGQLSNVPWRR 628
L++LIKPPN LR IAN VTG++N+S TLP+GQLSN+PWRR
Sbjct: 130 LQDLIKPPNFLRNIANQVTGRTNLSETLPTGQLSNIPWRR 169
Score = 61.7 bits (143), Expect = 5e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +1
Query: 130 MIHSLFIINPSGDVFLEKHWRSVIPRSVCDYYLEAQRAS 246
M++SLF +N SGDV LEKHW+SVI RS+CDY+ + Q+ S
Sbjct: 1 MLNSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKS 39
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 634 VKYANNEAYFDVVEEVDAIIDKSGATV 714
VKY NNEAYFDV+EE+D I+DK G+TV
Sbjct: 172 VKYTNNEAYFDVIEEIDVIVDKQGSTV 198
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
PVL + I + LV+ C+ V ++ FL++ V+ F +YF D E +++N+
Sbjct: 48 PVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNF 107
Query: 441 VVVYELLDEMLDNGFPLATESNI 509
VV+YELLDEM+D GFP TES I
Sbjct: 108 VVIYELLDEMMDFGFPQTTESRI 130
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
PVL + I + LV+ C+ V ++ FL++ V+ F +YF D E +++N+
Sbjct: 48 PVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNF 107
Query: 441 VVVYELLDEMLDNGFPLATESNI 509
VV+YELLDEM+D GFP TES I
Sbjct: 108 VVIYELLDEMMDFGFPQTTESRI 130
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +3
Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
PV + RG V + AV +Q V V EFL R DT Q YF E +K N+
Sbjct: 46 PVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNF 105
Query: 441 VVVYELLDEMLDNGFPLATESNI*KN*LNHQ 533
V++YELLDE+LD G+P T+ + K + Q
Sbjct: 106 VLIYELLDEILDFGYPQNTDPGVLKTFITQQ 136
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +3
Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
PV + RG V + AV +Q V V EFL R DT Q YF E +K N+
Sbjct: 46 PVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNF 105
Query: 441 VVVYELLDEMLDNGFPLATESNI*KN*LNHQ 533
V++YELLDE+LD G+P T+ + K + Q
Sbjct: 106 VLIYELLDEILDFGYPQNTDPGVLKTFITQQ 136
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/91 (38%), Positives = 47/91 (51%)
Frame = +3
Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
PV + RG V + AV +Q V V FL R DT Q YF E +K N+
Sbjct: 46 PVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNF 105
Query: 441 VVVYELLDEMLDNGFPLATESNI*KN*LNHQ 533
V++YELLDE+LD G+P T+ + K + Q
Sbjct: 106 VLIYELLDEILDFGYPQNTDPGVLKTFITQQ 136
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +3
Query: 312 VALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPL 491
V LV + K+ + V+ L+++V+ F +YF E +++N+V++YEL DEMLD G+P
Sbjct: 65 VYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQ 124
Query: 492 ATESNI 509
TES I
Sbjct: 125 TTESKI 130
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEM 470
L+ +E +H V+ +YF + E + N+ VY ++DEM
Sbjct: 78 LYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEML 473
L +E +HR V+ YF E I N+ Y +LDE L
Sbjct: 78 LITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 118
>Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical
protein ZK637.8f protein.
Length = 889
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 499 WQNTIPESVIDYYLDDEKRSESQ 521
>Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical
protein ZK637.8e protein.
Length = 888
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 504 WQNTIPESVIDYYLDDEKRSESQ 526
>Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical
protein ZK637.8d protein.
Length = 899
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 515 WQNTIPESVIDYYLDDEKRSESQ 537
>Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical
protein ZK637.8c protein.
Length = 894
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 504 WQNTIPESVIDYYLDDEKRSESQ 526
>Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical
protein ZK637.8b protein.
Length = 883
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 499 WQNTIPESVIDYYLDDEKRSESQ 521
>Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical
protein ZK637.8a protein.
Length = 905
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 515 WQNTIPESVIDYYLDDEKRSESQ 537
>AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuolar
proton pump 101kDa subunit variant protein.
Length = 889
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 499 WQNTIPESVIDYYLDDEKRSESQ 521
>AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuolar
proton pump 101kDa subunit variant protein.
Length = 888
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 504 WQNTIPESVIDYYLDDEKRSESQ 526
>AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuolar
proton pump 103kDa subunit variant protein.
Length = 899
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 515 WQNTIPESVIDYYLDDEKRSESQ 537
>AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuolar
proton pump 102kDa subunit variant protein.
Length = 894
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 504 WQNTIPESVIDYYLDDEKRSESQ 526
>AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuronal
vacuolar protonpump 100 kDa subunit variant protein.
Length = 883
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 499 WQNTIPESVIDYYLDDEKRSESQ 521
>AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuolar
proton pump 103kDa subunit variant protein.
Length = 905
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 WRSVIPRSVCDYYLEAQRASPNE 255
W++ IP SV DYYL+ ++ S ++
Sbjct: 515 WQNTIPESVIDYYLDDEKRSESQ 537
>U50312-4|AAA92321.1| 542|Caenorhabditis elegans Temporarily
assigned gene nameprotein 38 protein.
Length = 542
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 280 CGAANTGGTH*VMLSVLPNNNHILNEGSHFS 188
CG +TGG+ ++L+ L + N +L G ++
Sbjct: 191 CGTMSTGGSISILLACLAHRNRLLKRGEKYT 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,907
Number of Sequences: 27780
Number of extensions: 350047
Number of successful extensions: 975
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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