Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00872
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    99   3e-21
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    69   3e-12
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    69   4e-12
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun...    57   1e-08
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun...    57   1e-08
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun...    41   7e-04
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun...    41   7e-04
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa...    32   0.44 
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa...    32   0.44 
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica...    30   1.3  
At4g08520.1 68417.m01403 clathrin adaptor complex small chain fa...    29   4.1  
At1g10095.1 68414.m01138 protein prenyltransferase alpha subunit...    28   5.4  
At3g09800.1 68416.m01165 clathrin adaptor complex small chain fa...    27   9.4  
At1g47830.1 68414.m05324 clathrin coat assembly protein, putativ...    27   9.4  

>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/85 (51%), Positives = 58/85 (68%)
 Frame = +3

Query: 261 PVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENY 440
           PV+A+P HYL  I R G+  +A  + E+ PL  IEFL RV D   +Y     E +IK+N+
Sbjct: 48  PVIASPTHYLFQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNF 107

Query: 441 VVVYELLDEMLDNGFPLATESNI*K 515
           ++VYELLDEM+DNGFPL TE +I K
Sbjct: 108 IIVYELLDEMIDNGFPLTTEPSILK 132



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +2

Query: 509 LKELIKPPNILRTIANTVTGK-SNVSSTLPSGQLSNVPWR 625
           LKE+I PPN++  + + VTG  SNVS TLPSG  S VPWR
Sbjct: 131 LKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWR 170



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 637 KYANNEAYFDVVEEVDAIIDKSGATV 714
           KY++NE Y D+VEE+DAI+++ G  V
Sbjct: 175 KYSSNEVYVDLVEEMDAIVNRDGELV 200



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 130 MIHSLFIINPSGDVFLEKHWRS-VIPRSVCDYYLEAQRASPNEYHRCWLLHIITSYQF 300
           M+  +F+I+ SG+V LEK      + RS+C ++ +   +  + +    ++   T Y F
Sbjct: 1   MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLF 58


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 31/71 (43%), Positives = 45/71 (63%)
 Frame = +3

Query: 297 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 476
           +    V L+   +Q      ++ FLHRVVD F+ YF +  E  +++N+VVVYELLDEM+D
Sbjct: 63  VQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 122

Query: 477 NGFPLATESNI 509
            G+P  TE+ I
Sbjct: 123 FGYPQYTEARI 133


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/71 (42%), Positives = 45/71 (63%)
 Frame = +3

Query: 297 IHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLD 476
           +    + L+   +Q      ++ FLHRVVD F+ YF +  E  +++N+VVVYELLDEM+D
Sbjct: 63  VQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMD 122

Query: 477 NGFPLATESNI 509
            G+P  TE+ I
Sbjct: 123 FGYPQFTEARI 133


>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 451

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 33/110 (30%), Positives = 55/110 (50%)
 Frame = +3

Query: 258 PPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKEN 437
           PP+          +   G+  VA  +  V+P  V+E L R+    +DY     E   ++N
Sbjct: 49  PPIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKN 108

Query: 438 YVVVYELLDEMLDNGFPLATESNI*KN*LNHQIF*EQLPILLQENQMYPL 587
           +V+VYELLDE++D G+   T + +    L   IF E  PI++   ++ P+
Sbjct: 109 FVLVYELLDEVIDFGYVQTTSTEV----LKSYIFNE--PIVVSPARLQPI 152


>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 380

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 33/110 (30%), Positives = 55/110 (50%)
 Frame = +3

Query: 258 PPVLAAPHHYLISIHRGGVALVAVCKQEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKEN 437
           PP+          +   G+  VA  +  V+P  V+E L R+    +DY     E   ++N
Sbjct: 49  PPIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKN 108

Query: 438 YVVVYELLDEMLDNGFPLATESNI*KN*LNHQIF*EQLPILLQENQMYPL 587
           +V+VYELLDE++D G+   T + +    L   IF E  PI++   ++ P+
Sbjct: 109 FVLVYELLDEVIDFGYVQTTSTEV----LKSYIFNE--PIVVSPARLQPI 152


>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 441

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 EFLHRVVDTFQDYFSDC-TETIIKENYVVVYELLDEMLDNGFP 488
           +F+   V  F+ YF     E  I+ N+V++YELLDE++D G+P
Sbjct: 83  KFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125


>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 438

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 EFLHRVVDTFQDYFSDC-TETIIKENYVVVYELLDEMLDNGFP 488
           +F+   V  F+ YF     E  I+ N+V++YELLDE++D G+P
Sbjct: 83  KFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125


>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 162

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 336 QEVAPLFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNG 482
           QE   L V+E +H  V+    YF    E  +  N+   Y +LDE+L  G
Sbjct: 73  QEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121


>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 143

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNGFPLAT-ESNI 509
           L ++EF+H +V+T   +F +  E  I  +    + +L+EM+ NG  + T ++NI
Sbjct: 79  LAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANI 132


>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
           to clathrin assembly protein AP19 GI:2231698 from
           [Arabidopsis thaliana]
          Length = 161

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEMLDNG 482
           L V+E +H  V+    YF    E  +  N+   Y +LDE+L  G
Sbjct: 78  LEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121


>At4g08520.1 68417.m01403 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 181

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 ENYVVVYELLDEMLDNGFPLATESNI 509
           EN  +++  LDEM+D G  L T++N+
Sbjct: 118 ENLDLIFLCLDEMVDQGMVLETDANV 143


>At1g10095.1 68414.m01138 protein prenyltransferase alpha
           subunit-related contains weak hit to Pfam profile
           PF01239: Protein prenyltransferase alpha subunit repeat
          Length = 431

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 256 YHRCWLLHIITSYQFIEE 309
           YHRCWL+  +T  Q I+E
Sbjct: 218 YHRCWLVSYMTIEQVIQE 235


>At3g09800.1 68416.m01165 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 179

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 432 ENYVVVYELLDEMLDNGFPLATESNI 509
           EN  +++  LDEM+D G  L T+ N+
Sbjct: 116 ENLDLIFLCLDEMVDQGVVLETDPNV 141


>At1g47830.1 68414.m05324 clathrin coat assembly protein, putative
           similar to clathrin coat assembly protein AP17
           GB:CAA65533 GI:2959358 from [Zea mays]; contains Pfam
           profile: PF01217 clathrin adaptor complex small chain
          Length = 142

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 351 LFVIEFLHRVVDTFQDYFSDCTETIIKENYVVVYELLDEML 473
           L  +E +H  V+    +FS+  E  +  N+  VY +LDE +
Sbjct: 78  LAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,556
Number of Sequences: 28952
Number of extensions: 313118
Number of successful extensions: 791
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)