Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00871
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    82   8e-17
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    65   1e-11
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    65   1e-11
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.7  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 82.2 bits (194), Expect = 8e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +3

Query: 231 VGGKCV*RLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 383
           + G     LKVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 107 LAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 39/53 (73%), Positives = 46/53 (86%)
 Frame = +1

Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KD K
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLK 116


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%)
 Frame = +1

Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 398
           K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 76  KKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%)
 Frame = +1

Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +3

Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 410
           K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 76  KKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 195 RYFGISYSRGFGVGGKCV 248
           +Y G +YS G  V GKCV
Sbjct: 311 QYLGTNYSNGTAVDGKCV 328


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 203 WNILQQRFWSWREMRLKIKSEAYYSSAL 286
           WN+     W W E++ KI      +S L
Sbjct: 570 WNVNPTDLWDWAELKEKIAKHGIRNSLL 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,259
Number of Sequences: 5004
Number of extensions: 65794
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)