Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00871
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.4  
AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic hor...    23   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 597 ISITYSYIFSPDQQFQSH 544
           I+ TYS   SPD QF ++
Sbjct: 474 INFTYSLALSPDGQFGNY 491


>AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic
           hormone-I protein.
          Length = 52

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  VSKWAVVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIG 133
           V+   V+++  +L   RRK  QDQ + D +  L E IG
Sbjct: 14  VNSMDVLRQRVLLELARRKALQDQAQIDANRRLLETIG 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 603 LHISITYSYIFSPDQQFQSHHCP 535
           LH+ +T     SP  Q Q+  CP
Sbjct: 671 LHLHLTSPPARSPSSQAQASQCP 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,033
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)