Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00871
(812 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 96 3e-20
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 93 2e-19
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 93 2e-19
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 93 2e-19
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 93 2e-19
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 76 2e-14
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 67 1e-11
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 66 3e-11
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 66 3e-11
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 65 6e-11
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 65 6e-11
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 65 6e-11
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 64 1e-10
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 63 2e-10
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 62 3e-10
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 29 3.7
At4g19980.1 68417.m02925 expressed protein ; expression support... 29 3.7
At3g57880.1 68416.m06452 C2 domain-containing protein contains I... 28 6.4
At3g23295.1 68416.m02938 expressed protein 28 6.4
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 6.4
At5g16660.1 68418.m01950 expressed protein 28 8.5
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/53 (86%), Positives = 50/53 (94%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASKD K
Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 87
Score = 87.8 bits (208), Expect = 7e-18
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 389
LKVKRI+PRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 86 LKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKD K
Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLK 89
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 389
LKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 88 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKD K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLK 89
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 389
LKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 88 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKD K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLK 89
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 389
LKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 88 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKD K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLK 89
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 389
LKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 88 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +3
Query: 255 LKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIH 371
LKVKRITPRHLQLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 80 LKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/51 (62%), Positives = 37/51 (72%)
Frame = +1
Query: 109 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKD K
Sbjct: 31 FQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLK 81
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/53 (69%), Positives = 41/53 (77%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 25 LQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 410
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/53 (67%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 33 LQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 407
K RI PRH+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK A
Sbjct: 84 KKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAA 134
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/53 (67%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 25 LQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 410
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 64.9 bits (151), Expect = 6e-11
Identities = 36/53 (67%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 410
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 64.9 bits (151), Expect = 6e-11
Identities = 36/53 (67%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 410
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 64.9 bits (151), Expect = 6e-11
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++D K
Sbjct: 31 LQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 82
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 398
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 82 KKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K
Sbjct: 31 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 82
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 398
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 82 KKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 33 LQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNK 84
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 392
K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 84 KKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +1
Query: 103 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD*K 261
LQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 34 LQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNK 85
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 KVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 392
K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 85 KKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +2
Query: 335 NYRWRRRHPTH--TQISH 382
N+RWR RHP H T++SH
Sbjct: 628 NFRWRPRHPPHMDTRLSH 645
>At4g19980.1 68417.m02925 expressed protein ; expression supported
by MPSS
Length = 127
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 168 RSYGSSLFCRYFGISYSRGFGVGGKC 245
R GSSL CRY +SYS F GG C
Sbjct: 57 RRQGSSLQCRYDPMSYSLNFD-GGAC 81
>At3g57880.1 68416.m06452 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 773
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +2
Query: 338 YRWRRRHPTH--TQISH 382
YRWR RHP H T++SH
Sbjct: 633 YRWRPRHPPHMDTRLSH 649
>At3g23295.1 68416.m02938 expressed protein
Length = 74
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 618 KSPYSLHIS-ITYSYIFSPDQQFQSHHCPLH 529
K + L IS T++Y+ S D Q HH P+H
Sbjct: 5 KRHFDLCISRFTHTYVRSSDTQTHQHHVPVH 35
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +2
Query: 338 YRWRRRHPTH--TQISH 382
YRWR RHP H T++SH
Sbjct: 636 YRWRPRHPPHMDTRLSH 652
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 482 LCRCVTTAGIKCSIILSSHNLKLNGCTRTAFLSN 381
+ C+ TA + S + SH +K NG + T LS+
Sbjct: 1 MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSS 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,320
Number of Sequences: 28952
Number of extensions: 349840
Number of successful extensions: 777
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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