Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00870
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   2.8  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   2.8  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 523 STKTLCFIAN*GLIMTFGVGDSPFHPTSVSEGVHDVTHLPVFVFLFLEKLDPHVRD 356
           ST T   +   G+I     GD+ F  T   E    VT     + LF E  D  ++D
Sbjct: 33  STLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKD 88


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 523 STKTLCFIAN*GLIMTFGVGDSPFHPTSVSEGVHDVTHLPVFVFLFLEKLDPHVRD 356
           ST T   +   G+I     GD+ F  T   E    VT     + LF E  D  ++D
Sbjct: 33  STLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKD 88


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 99  GFRFDGVTSMLYHSRGIGEGFSGHYDEYYGLNVDTEALIYLMLANDIVHSI 251
           G ++DG+    +H R   + FS      Y   + +  LIY     +++H++
Sbjct: 55  GGKYDGIKYFDHHQREFNDTFS----PKYSTRLSSAGLIYKHFGREVIHAV 101


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 147 IGEGFSGHYDEYYGLNVDTEALIYLML 227
           I E  S H     G NVDTE L +L++
Sbjct: 190 IAESPSSHSTSPMGRNVDTETLSFLLI 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,259
Number of Sequences: 5004
Number of extensions: 50623
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)