Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00870
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 129 2e-30
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 125 3e-29
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927... 94 1e-19
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 31 0.72
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 29 3.9
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 29 5.1
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 129 bits (312), Expect = 2e-30
Identities = 53/83 (63%), Positives = 70/83 (84%)
Frame = +3
Query: 3 LWDSRLFNYSEIEVLRFLLSNLRWYQEEYRFDGFRFDGVTSMLYHSRGIGEGFSGHYDEY 182
LWDSRLFNY+ EVLRFLLSNLR++ +E+ FDGFRFDGVTSMLYH GI +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 183 YGLNVDTEALIYLMLANDIVHSI 251
+ L+ D +A++Y+MLAN ++H +
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKL 390
Score = 115 bits (276), Expect = 5e-26
Identities = 53/83 (63%), Positives = 58/83 (69%)
Frame = +2
Query: 269 IAEDVSGMPASCRPVREGGTGFDYRLGMAIPDMWIXXXXXXXXXXWKMGHIVHTLTNRRW 448
+AEDVSGMP CRPV EGG GFD+RL MAIPD WI W M IV TLTNRR+
Sbjct: 397 VAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRY 456
Query: 449 MEGTIAYAESHDQALVGDKT*RF 517
E IAYAESHDQ++VGDKT F
Sbjct: 457 TEKCIAYAESHDQSIVGDKTIAF 479
Score = 108 bits (260), Expect = 4e-24
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = +1
Query: 508 IAFWLMDAAMYTHMSTLSEPSAVVERGLALHCMIRLITHALGGEGYLNFIGNEFGHPEWL 687
IAF LMD MYT MS L S + RG+AL MI IT ALGG+GYLNF+GNEFGHPEW+
Sbjct: 477 IAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWI 536
Query: 688 DFPRAGNNSSYHYARR 735
DFPR GNN SY RR
Sbjct: 537 DFPREGNNWSYDKCRR 552
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 125 bits (302), Expect = 3e-29
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = +3
Query: 3 LWDSRLFNYSEIEVLRFLLSNLRWYQEEYRFDGFRFDGVTSMLYHSRGIGEGFSGHYDEY 182
+WDSRLFNY EVLRFLLSN RW+ EEY+FDGFRFDGVTSM+Y G+ F+G+Y EY
Sbjct: 437 MWDSRLFNYGNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY 496
Query: 183 YGLNVDTEALIYLMLANDIVHSI 251
+G D +A++YLML ND++H +
Sbjct: 497 FGFATDADAVVYLMLVNDLIHGL 519
Score = 118 bits (284), Expect = 5e-27
Identities = 56/85 (65%), Positives = 60/85 (70%)
Frame = +2
Query: 263 ITIAEDVSGMPASCRPVREGGTGFDYRLGMAIPDMWIXXXXXXXXXXWKMGHIVHTLTNR 442
ITI EDVSGMP PV++GG GFDYRL MA+PD WI WKMG IVHTLTNR
Sbjct: 524 ITIGEDVSGMPTFALPVQDGGVGFDYRLHMAVPDKWIELLKQSDES-WKMGDIVHTLTNR 582
Query: 443 RWMEGTIAYAESHDQALVGDKT*RF 517
RW E + YAESHDQALVGDKT F
Sbjct: 583 RWSEKCVTYAESHDQALVGDKTIAF 607
Score = 103 bits (246), Expect = 2e-22
Identities = 51/87 (58%), Positives = 59/87 (67%), Gaps = 11/87 (12%)
Frame = +1
Query: 508 IAFWLMDAAMYTHMSTLSEPSAVVERGLALHCMIRLITHALGGEGYLNFIGNEFGHPEWL 687
IAFWLMD MY M+ + ++RG+ALH MIRLIT LGGEGYLNF+GNEFGHPEW+
Sbjct: 605 IAFWLMDKDMYDFMALDRPATPSIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWI 664
Query: 688 DFPRA-----------GNNSSYHYARR 735
DFPRA GNN+SY RR
Sbjct: 665 DFPRAPQVLPNGKFIPGNNNSYDKCRR 691
>06_02_0365 +
15190841-15190988,15191296-15191754,15192692-15192782,
15192902-15193003,15193126-15193228,15193548-15193685,
15193912-15193974,15195042-15195124,15196312-15196411,
15196640-15196717,15196834-15196941,15197987-15198067,
15200179-15200220,15200221-15200283,15200426-15200482
Length = 571
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/82 (50%), Positives = 57/82 (69%)
Frame = +3
Query: 6 WDSRLFNYSEIEVLRFLLSNLRWYQEEYRFDGFRFDGVTSMLYHSRGIGEGFSGHYDEYY 185
W +R+F Y +I+VL FLLSNL W+ EYR DGF+F + SMLY G F+G +EYY
Sbjct: 211 WGTRMFKYDDIDVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFST-FTGATEEYY 269
Query: 186 GLNVDTEALIYLMLANDIVHSI 251
VD +ALIYL++AN+++H +
Sbjct: 270 NQYVDEDALIYLIIANEMLHEL 291
Score = 66.1 bits (154), Expect = 3e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 260 VITIAEDVSGMPASCRPVREGGTGFDYRLGMAIPDMWIXXXXXXXXXXWKMGHIVHTLTN 439
+ITIAED + P C P +GG GFDY + ++IP+MW+ W M I+ L N
Sbjct: 295 IITIAEDATFYPGLCEPTTQGGLGFDYWVNLSIPEMWLWHLENVPEQEWSMNKIMRVLVN 354
Query: 440 RRWMEGTIAYAESHDQ 487
++Y E+H+Q
Sbjct: 355 NN--SNMLSYVENHNQ 368
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 604 MIRLITHALGGEGYLNFIGNEFGHPEWLDFPRAGNNSSYHYARR 735
+I+LIT G YLNFIGNEF HP+ ++FP + N+ S+ A R
Sbjct: 430 IIKLITFTTSGGAYLNFIGNEFAHPKRIEFPMSSNDYSFCLANR 473
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 42 VLRFLLSNLRWYQEEYRFDGFRFD 113
V +L +LR + EEY DGFRFD
Sbjct: 402 VKELILDSLRHWVEEYHIDGFRFD 425
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 21 FNYSEIEVLRFLLSNLRWYQEEYRFDGFRFD 113
FN + V F++ LR++ E DGFRFD
Sbjct: 402 FNCNHPVVREFIVDCLRYWVTEMHVDGFRFD 432
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 396 TKTGRWVTSCTPSLTDV-GWKGLSPTP 473
+ TG+W+ +PS TD+ GLSP P
Sbjct: 213 SSTGQWLAGASPSTTDLFNGAGLSPPP 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,683
Number of Sequences: 37544
Number of extensions: 385443
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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