Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00870
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   5e-31
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               30   1.7  
SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  

>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score =  131 bits (317), Expect = 5e-31
 Identities = 57/76 (75%), Positives = 65/76 (85%)
 Frame = +1

Query: 508 IAFWLMDAAMYTHMSTLSEPSAVVERGLALHCMIRLITHALGGEGYLNFIGNEFGHPEWL 687
           IAFWLMD  MYT+MS ++  + +++RG+ALH MIRLIT  LGGE YLNFIGNEFGHPEWL
Sbjct: 590 IAFWLMDKEMYTNMSDMTPFTPIIDRGIALHKMIRLITMGLGGEAYLNFIGNEFGHPEWL 649

Query: 688 DFPRAGNNSSYHYARR 735
           DFPRAGNN SYHYARR
Sbjct: 650 DFPRAGNNISYHYARR 665



 Score =  126 bits (304), Expect = 2e-29
 Identities = 60/86 (69%), Positives = 64/86 (74%)
 Frame = +2

Query: 260 VITIAEDVSGMPASCRPVREGGTGFDYRLGMAIPDMWIXXXXXXXXXXWKMGHIVHTLTN 439
           VIT+AE+VSG+P  CRP+ EGGTGFDYRLGMAIPDMWI          W MG IV TL N
Sbjct: 507 VITVAEEVSGLPGLCRPIAEGGTGFDYRLGMAIPDMWIKVLKSLKDEDWVMGDIVWTLIN 566

Query: 440 RRWMEGTIAYAESHDQALVGDKT*RF 517
           RR  E TIAYAESHDQALVGDKT  F
Sbjct: 567 RRHNEKTIAYAESHDQALVGDKTIAF 592



 Score =  108 bits (260), Expect = 4e-24
 Identities = 48/83 (57%), Positives = 62/83 (74%)
 Frame = +3

Query: 3   LWDSRLFNYSEIEVLRFLLSNLRWYQEEYRFDGFRFDGVTSMLYHSRGIGEGFSGHYDEY 182
           LWDSRLF+Y++            WY + Y+FDGFRFDGVTSM+YH  G+G GF G Y +Y
Sbjct: 433 LWDSRLFDYTQ------------WYMDFYQFDGFRFDGVTSMIYHDHGLGHGFGGDYPDY 480

Query: 183 YGLNVDTEALIYLMLANDIVHSI 251
           +GL VDT++LIYLMLAN+++HSI
Sbjct: 481 FGLGVDTQSLIYLMLANEMLHSI 503


>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 34  RSRFCVS----YYQTCDGIKKNIDSMASGSMA*RQCCTTV 141
           R+R C +    Y  TCDG   ++DS  +G  A   CC +V
Sbjct: 38  RNRICCNNHCTYSPTCDGYSCSMDSDCNGGYASLSCCNSV 77


>SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 33  EIEVLRFLLSNLRWYQEEYR 92
           + +VLR +L N+RW++ +YR
Sbjct: 90  QTKVLRAILGNIRWFESDYR 109


>SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 89  SIRWLQVRWRDVNVVPQSRYR*RVLWSLRRILR-TECRHRGPDLPDARQRHCAQHRYRVI 265
           + R LQ RWR++  VP+S+Y          + R  +  H   D  D   +H  + + ++I
Sbjct: 4   TFRALQDRWREIGAVPRSKYNDTWRNYHHHVERFYDLLHLSNDFRDLDFKHNLEEKLKLI 63

Query: 266 TIAEDVS 286
             AE ++
Sbjct: 64  ERAETLA 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,952,359
Number of Sequences: 59808
Number of extensions: 423109
Number of successful extensions: 1316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)