Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00870
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 98  WLQVRWRDVNV 130
           WL++ W DVN+
Sbjct: 75  WLKLEWNDVNM 85


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 257 CIDAVHNVVGEHQVDQGLGVYIQSVIFVVVTREPFTDTA 141
           C+  +    G   + +G GV +Q +I        F DTA
Sbjct: 162 CLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 257 CIDAVHNVVGEHQVDQGLGVYIQSVIFVVVTREPFTDTA 141
           C+  +    G   + +G GV +Q +I        F DTA
Sbjct: 162 CLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 RGPDLPDARQRHCAQHRYRVITIAEDV 283
           +GP  PD  +  CA    ++  I+E+V
Sbjct: 413 KGPANPDIFRVSCATEHSQLTNISEEV 439


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 RGPDLPDARQRHCAQHRYRVITIAEDV 283
           +GP  PD  +  CA    ++  I+E+V
Sbjct: 119 KGPANPDIFRVSCATEHSQLTNISEEV 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,972
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)