Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.70 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   0.93 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 NVPCGTSGGVLIYFERIEVVNKLDP 506
           +VPCGTSG  L +  ++ V  K  P
Sbjct: 225 SVPCGTSGNPLEWTGQVTVRKKRKP 249


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 67  SLMFNFAMFKTIAIGVNFL 123
           +L+F FA F+T++ GV+F+
Sbjct: 273 ALLFFFAGFETVSTGVSFM 291


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +3

Query: 324 GGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFE 476
           GG     T++AGF     +        TTL  D  + VP    G   + F+
Sbjct: 784 GGTPGKYTAEAGFMSFYEICDFLHEDNTTLVWDNEQQVPFAYRGNQWVGFD 834


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,260
Number of Sequences: 336
Number of extensions: 3953
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)